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POSTm  

Phylogeny-Guided OTU-Specific Association Test for Microbiome Data
View on CRAN: Click here


Download and install POSTm package within the R console
Install from CRAN:
install.packages("POSTm")

Install from Github:
library("remotes")
install_github("cran/POSTm")

Install by package version:
library("remotes")
install_version("POSTm", "1.3")



Attach the package and use:
library("POSTm")
Maintained by
Shannon T. Holloway
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-04-30
Latest Update: 2023-12-13
Description:
Implements the Phylogeny-Guided Microbiome OTU-Specific Association Test method, which boosts the testing power by adaptively borrowing information from phylogenetically close OTUs (operational taxonomic units) of the target OTU. This method is built on a kernel machine regression framework and allows for flexible modeling of complex microbiome effects, adjustments for covariates, and can accommodate both continuous and binary outcomes.
How to cite:
Shannon T. Holloway (2021). POSTm: Phylogeny-Guided OTU-Specific Association Test for Microbiome Data. R package version 1.3, https://cran.r-project.org/web/packages/POSTm
Previous versions and publish date:
1.1 (2021-04-30 08:50), 1.2 (2022-06-07 01:10), 1.3 (2023-12-14 00:30)
Other packages that cited POSTm R package
View POSTm citation profile
Other R packages that POSTm depends, imports, suggests or enhances
Functions, R codes and Examples using the POSTm R package
Some associated functions: POSTmData . p.adjust . plot . post . print . 
Some associated R codes: ACAT.R . CKAT.R . POSTmData.R . distanceMatrix.R . getKernel.R . glmFit.R . lmFit.R . p.adjust.POST.R . plot.POST.R . post.R . print.POST.R .  Full POSTm package functions and examples
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