Other packages > Find by keyword >

PLEXI  

Multiplex Network Analysis
View on CRAN: Click here


Download and install PLEXI package within the R console
Install from CRAN:
install.packages("PLEXI")

Install from Github:
library("remotes")
install_github("cran/PLEXI")

Install by package version:
library("remotes")
install_version("PLEXI", "1.0.0")



Attach the package and use:
library("PLEXI")
Maintained by
Behnam Yousefi
[Scholar Profile | Author Map]
First Published: 2023-08-09
Latest Update: 2023-08-09
Description:
Interactions between different biological entities are crucial for the function of biological systems. In such networks, nodes represent biological elements, such as genes, proteins and microbes, and their interactions can be defined by edges, which can be either binary or weighted. The dysregulation of these networks can be associated with different clinical conditions such as diseases and response to treatments. However, such variations often occur locally and do not concern the whole network. To capture local variations of such networks, we propose multiplex network differential analysis (MNDA). MNDA allows to quantify the variations in the local neighborhood of each node (e.g. gene) between the two given clinical states, and to test for statistical significance of such variation. Yousefi et al. (2023) .
How to cite:
Behnam Yousefi (2023). PLEXI: Multiplex Network Analysis. R package version 1.0.0, https://cran.r-project.org/web/packages/PLEXI. Accessed 29 Apr. 2025.
Previous versions and publish date:
No previous versions
Other packages that cited PLEXI R package
View PLEXI citation profile
Other R packages that PLEXI depends, imports, suggests or enhances
Complete documentation for PLEXI
Functions, R codes and Examples using the PLEXI R package
Full PLEXI package functions and examples
Downloads during the last 30 days
03/3003/3104/0104/0204/0304/0404/0504/0604/0704/0804/0904/1004/1104/1204/1304/1404/1504/1604/1704/1804/1904/2004/2104/2204/2304/2404/2504/2604/2704/28Downloads for PLEXI24681012141618TrendBars

Today's Hot Picks in Authors and Packages

knockoff  
The Knockoff Filter for Controlled Variable Selection
The knockoff filter is a general procedure for controlling the false discovery rate (FDR) when perf ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
phecodemap  
Visualization for PheCode Mapping with ICD-9 and ICD-10-CM Codes
To build a shiny app for visualization of the hierarchy of PheCode Mapping with International Classi ...
Download / Learn more Package Citations See dependency  
NBBDesigns  
Neighbour Balanced Block Designs (NBBDesigns)
Neighbour-balanced designs ensure that no treatment is disadvantaged unfairly by its surroundings. T ...
Download / Learn more Package Citations See dependency  
PCAmatchR  
Match Cases to Controls Based on Genotype Principal Components
Matches cases to controls based on genotype principal components (PC). In order to produce better r ...
Download / Learn more Package Citations See dependency  
bigGP  
Distributed Gaussian Process Calculations
Distributes Gaussian process calculations across nodes in a distributed memory setting, using Rmpi. ...
Download / Learn more Package Citations See dependency  

24,142

R Packages

207,311

Dependencies

65,176

Author Associations

24,143

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA