Other packages > Find by keyword >

PLEXI  

Multiplex Network Analysis
View on CRAN: Click here


Download and install PLEXI package within the R console
Install from CRAN:
install.packages("PLEXI")

Install from Github:
library("remotes")
install_github("cran/PLEXI")

Install by package version:
library("remotes")
install_version("PLEXI", "1.0.0")



Attach the package and use:
library("PLEXI")
Maintained by
Behnam Yousefi
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-08-09
Latest Update: 2023-08-09
Description:
Interactions between different biological entities are crucial for the function of biological systems. In such networks, nodes represent biological elements, such as genes, proteins and microbes, and their interactions can be defined by edges, which can be either binary or weighted. The dysregulation of these networks can be associated with different clinical conditions such as diseases and response to treatments. However, such variations often occur locally and do not concern the whole network. To capture local variations of such networks, we propose multiplex network differential analysis (MNDA). MNDA allows to quantify the variations in the local neighborhood of each node (e.g. gene) between the two given clinical states, and to test for statistical significance of such variation. Yousefi et al. (2023) .
How to cite:
Behnam Yousefi (2023). PLEXI: Multiplex Network Analysis. R package version 1.0.0, https://cran.r-project.org/web/packages/PLEXI. Accessed 26 Jun. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited PLEXI R package
View PLEXI citation profile
Other R packages that PLEXI depends, imports, suggests or enhances
Complete documentation for PLEXI
Functions, R codes and Examples using the PLEXI R package
Full PLEXI package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

ggblanket  
Simplify 'ggplot2' Visualisation
Simplify 'ggplot2' visualisation with 'ggblanket' wrapper functions. ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
tactile  
New and Extended Plots, Methods, and Panel Functions for 'lattice'
Extensions to 'lattice', providing new high-level functions, methods for existing functions, panel f ...
Download / Learn more Package Citations See dependency  
colormap  
Color Palettes using Colormaps Node Module
Allows to generate colors from palettes defined in the colormap module of 'Node.js'. (see ...
Download / Learn more Package Citations See dependency  
infotheo  
Information-Theoretic Measures
Implements various measures of information theory based on several entropy estimators. ...
Download / Learn more Package Citations See dependency  
poptrend  
Estimate Smooth and Linear Trends from Population Count Survey Data
Functions to estimate and plot smooth or linear population trends, or population indices, from anim ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA