Other packages > Find by keyword >

PCRedux  

Quantitative Polymerase Chain Reaction (qPCR) Data Mining and Machine Learning Toolkit as Described in Burdukiewicz (2022) <doi:10.21105/Joss.04407>
View on CRAN: Click here


Download and install PCRedux package within the R console
Install from CRAN:
install.packages("PCRedux")

Install from Github:
library("remotes")
install_github("cran/PCRedux")

Install by package version:
library("remotes")
install_version("PCRedux", "1.2-1")



Attach the package and use:
library("PCRedux")
Maintained by
Stefan Roediger
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-11-20
Latest Update: 2025-06-13
Description:
Extracts features from amplification curve data of quantitative Polymerase Chain Reactions (qPCR) (Pabinger S. et al. (2014) ) for machine learning purposes. Helper functions prepare the amplification curve data for processing as functional data (e.g., Hausdorff distance) or enable the plotting of amplification curve classes (negative, ambiguous, positive). The hookreg() and hookregNL() functions (Burdukiewicz M. et al. (2018) ) can be used to predict amplification curves with an hook effect-like curvature. The pcrfit_single() function can be used to extract features from an amplification curve.
How to cite:
Stefan Roediger (2017). PCRedux: Quantitative Polymerase Chain Reaction (qPCR) Data Mining and Machine Learning Toolkit as Described in Burdukiewicz (2022) <doi:10.21105/Joss.04407>. R package version 1.2-1, https://cran.r-project.org/web/packages/PCRedux. Accessed 08 Oct. 2026.
Previous versions and publish date:
(2026-07-09 08:16), 0.2.5-1 (2017-11-20 19:14), 0.2.6-1 (2018-06-13 23:38), 0.2.6-4 (2018-10-28 13:50), 0.2.6 (2018-05-14 10:05), 1.0-1 (2019-10-28 23:40), 1.0-2 (2019-10-31 11:30), 1.0-4 (2020-01-07 23:40), 1.0-6 (2020-03-06 09:10), 1.1-2 (2022-05-11 13:40), 1.1 (2021-03-16 16:50), 1.2-0 (2025-06-13 07:00)
Other packages that cited PCRedux R package
View PCRedux citation profile
Other R packages that PCRedux depends, imports, suggests or enhances
Complete documentation for PCRedux
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

eDMA  
Dynamic Model Averaging with Grid Search
Perform dynamic model averaging with grid search as in Dangl and Halling (2012) ...
Download / Learn more Package Citations See dependency  
imguR  
An Imgur.com API Client Package
A complete API client for the image hosting service Imgur.com, including the an imgur graphics devic ...
Download / Learn more Package Citations See dependency  
shinymodels  
Interactive Assessments of Models
Launch a 'shiny' application for 'tidymodels' results. For classification or regression models, the ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
kriens  
Continuation Passing Style Development
Provides basic functions for Continuation-Passing Style development. ...
Download / Learn more Package Citations See dependency  

28,989

R Packages

247,686

Dependencies

76,495

Author Associations

28,990

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA