Other packages > Find by keyword >

PCRedux  

Quantitative Polymerase Chain Reaction (qPCR) Data Mining and Machine Learning Toolkit as Described in Burdukiewicz (2022) <doi:10.21105/Joss.04407>
View on CRAN: Click here


Download and install PCRedux package within the R console
Install from CRAN:
install.packages("PCRedux")

Install from Github:
library("remotes")
install_github("cran/PCRedux")

Install by package version:
library("remotes")
install_version("PCRedux", "1.2-1")



Attach the package and use:
library("PCRedux")
Maintained by
Stefan Roediger
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-11-20
Latest Update: 2025-06-13
Description:
Extracts features from amplification curve data of quantitative Polymerase Chain Reactions (qPCR) (Pabinger S. et al. (2014) ) for machine learning purposes. Helper functions prepare the amplification curve data for processing as functional data (e.g., Hausdorff distance) or enable the plotting of amplification curve classes (negative, ambiguous, positive). The hookreg() and hookregNL() functions (Burdukiewicz M. et al. (2018) ) can be used to predict amplification curves with an hook effect-like curvature. The pcrfit_single() function can be used to extract features from an amplification curve.
How to cite:
Stefan Roediger (2017). PCRedux: Quantitative Polymerase Chain Reaction (qPCR) Data Mining and Machine Learning Toolkit as Described in Burdukiewicz (2022) <doi:10.21105/Joss.04407>. R package version 1.2-1, https://cran.r-project.org/web/packages/PCRedux. Accessed 09 Aug. 2026.
Previous versions and publish date:
(2026-07-09 08:16), 0.2.5-1 (2017-11-20 19:14), 0.2.6-1 (2018-06-13 23:38), 0.2.6-4 (2018-10-28 13:50), 0.2.6 (2018-05-14 10:05), 1.0-1 (2019-10-28 23:40), 1.0-2 (2019-10-31 11:30), 1.0-4 (2020-01-07 23:40), 1.0-6 (2020-03-06 09:10), 1.1-2 (2022-05-11 13:40), 1.1 (2021-03-16 16:50), 1.2-0 (2025-06-13 07:00)
Other packages that cited PCRedux R package
View PCRedux citation profile
Other R packages that PCRedux depends, imports, suggests or enhances
Complete documentation for PCRedux
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

recogito  
Interactive Annotation of Text and Images
Annotate text with entities and the relations between them. Annotate areas of interest in images wit ...
Download / Learn more Package Citations See dependency  
survivalROC  
Time-Dependent ROC Curve Estimation from Censored Survival Data
Compute time-dependent ROC curve from censored survival data using Kaplan-Meier (KM) or Nearest Neig ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
rcites  
R Interface to the Species+ Database
A programmatic interface to the Species+ database via the Species+/CITES ...
Download / Learn more Package Citations See dependency  
SubTite  
Subgroup Specific Optimal Dose Assignment
Chooses subgroup specific optimal doses in a phase I dose finding clinical trial allowing for subgro ...
Download / Learn more Package Citations See dependency  

28,194

R Packages

239,283

Dependencies

74,752

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA