Other packages > Find by keyword >

PCBS  

Principal Component BiSulfite
View on CRAN: Click here


Download and install PCBS package within the R console
Install from CRAN:
install.packages("PCBS")

Install from Github:
library("remotes")
install_github("cran/PCBS")

Install by package version:
library("remotes")
install_version("PCBS", "0.1.1")



Attach the package and use:
library("PCBS")
Maintained by
Kathryn Lande
[Scholar Profile | Author Map]
First Published: 2024-04-23
Latest Update: 2024-04-23
Description:
A system for fast, accurate, and flexible whole genome bisulfite sequencing (WGBS) data analysis of two-condition comparisons. Principle Component BiSulfite, 'PCBS', assigns methylated loci eigenvector values from the treatment-delineating principal component in lieu of running millions of pairwise statistical tests, which dramatically increases analysis flexibility and reduces computational requirements. Methods: <https://katlande.github.io/PCBS/articles/Differential_Methylation.html>.
How to cite:
Kathryn Lande (2024). PCBS: Principal Component BiSulfite. R package version 0.1.1, https://cran.r-project.org/web/packages/PCBS. Accessed 20 Feb. 2025.
Previous versions and publish date:
0.1.0 (2024-04-23 11:00)
Other packages that cited PCBS R package
View PCBS citation profile
Other R packages that PCBS depends, imports, suggests or enhances
Complete documentation for PCBS
Functions, R codes and Examples using the PCBS R package
Full PCBS package functions and examples
Downloads during the last 30 days
01/2101/2201/2301/2401/2501/2601/2701/2801/2901/3001/3102/0102/0202/0302/0402/0502/0602/0702/0802/0902/1002/1102/1202/1302/1402/1502/1602/1702/1802/19Downloads for PCBS24681012141618TrendBars
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
healthyR.ai  
The Machine Learning and AI Modeling Companion to 'healthyR'
Hospital machine learning and ai data analysis workflow tools, modeling, and automations. This li ...
Download / Learn more Package Citations See dependency  
CarletonStats  
Functions for Statistics Classes at Carleton College
Includes commands for bootstrapping and permutation tests, a command for created grouped bar plots, ...
Download / Learn more Package Citations See dependency  
reader  
Suite of Functions to Flexibly Read Data from Files
A set of functions to simplify reading data from files. The main function, reader(), should read mos ...
Download / Learn more Package Citations See dependency  
EffectStars  
Visualization of Categorical Response Models
Notice: The package EffectStars2 provides a more up-to-date implementation of effect stars! EffectSt ...
Download / Learn more Package Citations See dependency  
multgee  
GEE Solver for Correlated Nominal or Ordinal Multinomial Responses
GEE solver for correlated nominal or ordinal multinomial responses using a local odds ratios parame ...
Download / Learn more Package Citations See dependency  

23,712

R Packages

205,795

Dependencies

64,332

Author Associations

23,631

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA