Other packages > Find by keyword >

PCBS  

Principal Component BiSulfite
View on CRAN: Click here


Download and install PCBS package within the R console
Install from CRAN:
install.packages("PCBS")

Install from Github:
library("remotes")
install_github("cran/PCBS")

Install by package version:
library("remotes")
install_version("PCBS", "0.1.1")



Attach the package and use:
library("PCBS")
Maintained by
Kathryn Lande
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-04-23
Latest Update: 2024-04-23
Description:
A system for fast, accurate, and flexible whole genome bisulfite sequencing (WGBS) data analysis of two-condition comparisons. Principle Component BiSulfite, 'PCBS', assigns methylated loci eigenvector values from the treatment-delineating principal component in lieu of running millions of pairwise statistical tests, which dramatically increases analysis flexibility and reduces computational requirements. Methods: <https://katlande.github.io/PCBS/articles/Differential_Methylation.html>.
How to cite:
Kathryn Lande (2024). PCBS: Principal Component BiSulfite. R package version 0.1.1, https://cran.r-project.org/web/packages/PCBS. Accessed 21 Nov. 2024.
Previous versions and publish date:
0.1.0 (2024-04-23 11:00)
Other packages that cited PCBS R package
View PCBS citation profile
Other R packages that PCBS depends, imports, suggests or enhances
Complete documentation for PCBS
Functions, R codes and Examples using the PCBS R package
Full PCBS package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

SCBiclust  
Identifies Mean, Variance, and Hierarchically Clustered Biclusters
Identifies a bicluster, a submatrix of the data such that the features and observations within the s ...
Download / Learn more Package Citations See dependency  
crossrun  
Joint Distribution of Number of Crossings and Longest Run
Joint distribution of number of crossings and the longest run in a series of independent Bernoulli ...
Download / Learn more Package Citations See dependency  
pkgdepends  
Package Dependency Resolution and Downloads
Find recursive dependencies of 'R' packages from various sources. Solve the dependencies to obtain ...
Download / Learn more Package Citations See dependency  
RcppHNSW  
'Rcpp' Bindings for 'hnswlib', a Library for Approximate Nearest Neighbors
'Hnswlib' is a C++ library for Approximate Nearest Neighbors. This package provides a minimal R int ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
kgschart  
KGS Rank Graph Parser
Restore underlining numeric data from rating history graph of KGS (an online platform of the game o ...
Download / Learn more Package Citations See dependency  

23,229

R Packages

199,929

Dependencies

62,984

Author Associations

23,230

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA