Other packages > Find by keyword >

PCAPAM50  

Enhanced 'PAM50' Subtyping of Breast Cancer
View on CRAN: Click here


Download and install PCAPAM50 package within the R console
Install from CRAN:
install.packages("PCAPAM50")

Install from Github:
library("remotes")
install_github("cran/PCAPAM50")

Install by package version:
library("remotes")
install_version("PCAPAM50", "1.0.3")



Attach the package and use:
library("PCAPAM50")
Maintained by
Praveen-Kumar Raj-Kumar
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-07-08
Latest Update: 2025-01-09
Description:
Accurate classification of breast cancer tumors based on gene expression data is not a trivial task, and it lacks standard practices.The 'PAM50' classifier, which uses 50 gene centroid correlation distances to classify tumors, faces challenges with balancing estrogen receptor (ER) status and gene centering. The 'PCAPAM50' package leverages principal component analysis and iterative 'PAM50' calls to create a gene expression-based ER-balanced subset for gene centering, avoiding the use of protein expression-based ER data resulting into an enhanced Breast Cancer subtyping.
How to cite:
Praveen-Kumar Raj-Kumar (2024). PCAPAM50: Enhanced 'PAM50' Subtyping of Breast Cancer. R package version 1.0.3, https://cran.r-project.org/web/packages/PCAPAM50. Accessed 11 Sep. 2026.
Previous versions and publish date:
(2026-07-30 19:00), 1.0.0 (2024-07-08 07:30), 1.0.1 (2024-07-09 09:50), 1.0.2 (2024-11-24 04:10), 1.0.3 (2025-01-09 18:10)
Other packages that cited PCAPAM50 R package
View PCAPAM50 citation profile
Other R packages that PCAPAM50 depends, imports, suggests or enhances
Complete documentation for PCAPAM50
Functions, R codes and Examples using the PCAPAM50 R package
Full PCAPAM50 package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

LDLcalc  
Calculate and Predict the Low Density Lipoprotein Values
A wide variety of ways to calculate (through equations) or predict (using 9 Machine learning methods ...
Download / Learn more Package Citations See dependency  
IDE  
Integro-Difference Equation Spatio-Temporal Models
The Integro-Difference Equation model is a linear, dynamical model used to model phenomena that evo ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
c3  
'C3.js' Chart Library
Create interactive charts with the 'C3.js' charting library. All plot types in ' ...
Download / Learn more Package Citations See dependency  
PublicationBias  
Sensitivity Analysis for Publication Bias in Meta-Analyses
Performs sensitivity analysis for publication bias in meta-analyses (per Mathur & VanderWeele, 2020 ...
Download / Learn more Package Citations See dependency  

28,480

R Packages

239,283

Dependencies

75,677

Author Associations

28,481

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA