Other packages > Find by keyword >

PCAPAM50  

Enhanced 'PAM50' Subtyping of Breast Cancer
View on CRAN: Click here


Download and install PCAPAM50 package within the R console
Install from CRAN:
install.packages("PCAPAM50")

Install from Github:
library("remotes")
install_github("cran/PCAPAM50")

Install by package version:
library("remotes")
install_version("PCAPAM50", "1.0.4")



Attach the package and use:
library("PCAPAM50")
Maintained by
Praveen-Kumar Raj-Kumar
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-07-08
Latest Update: 2025-01-09
Description:
Accurate classification of breast cancer tumors based on gene expression data is not a trivial task, and it lacks standard practices.The 'PAM50' classifier, which uses 50 gene centroid correlation distances to classify tumors, faces challenges with balancing estrogen receptor (ER) status and gene centering. The 'PCAPAM50' package leverages principal component analysis and iterative 'PAM50' calls to create a gene expression-based ER-balanced subset for gene centering, avoiding the use of protein expression-based ER data resulting into an enhanced Breast Cancer subtyping.
How to cite:
Praveen-Kumar Raj-Kumar (2024). PCAPAM50: Enhanced 'PAM50' Subtyping of Breast Cancer. R package version 1.0.4, https://cran.r-project.org/web/packages/PCAPAM50. Accessed 28 Oct. 2026.
Previous versions and publish date:
(2026-07-30 19:00), 1.0.0 (2024-07-08 07:30), 1.0.1 (2024-07-09 09:50), 1.0.2 (2024-11-24 04:10), 1.0.3 (2025-01-09 18:10)
Other packages that cited PCAPAM50 R package
View PCAPAM50 citation profile
Other R packages that PCAPAM50 depends, imports, suggests or enhances
Complete documentation for PCAPAM50
Functions, R codes and Examples using the PCAPAM50 R package
Full PCAPAM50 package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

ncdf4  
Interface to Unidata netCDF (Version 4 or Earlier) Format Data Files
Provides a high-level R interface to data files written using Unidata's netCDF library (version 4 or ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
NPHazardRate  
Nonparametric Hazard Rate Estimation
Provides functions and examples for histogram, kernel (classical, variable bandwidth and transformat ...
Download / Learn more Package Citations See dependency  
msamp  
Estimate Sample Size to Detect Bacterial Contamination in a Product Lot
Estimates the sample size needed to detect microbial contamination in a lot with a user-specified d ...
Download / Learn more Package Citations See dependency  
cats  
Cohort Platform Trial Simulation
Cohort plAtform Trial Simulation whereby every cohort consists of two arms, control and experimenta ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA