Other packages > Find by keyword >

PCAPAM50  

Enhanced 'PAM50' Subtyping of Breast Cancer
View on CRAN: Click here


Download and install PCAPAM50 package within the R console
Install from CRAN:
install.packages("PCAPAM50")

Install from Github:
library("remotes")
install_github("cran/PCAPAM50")

Install by package version:
library("remotes")
install_version("PCAPAM50", "1.0.3")



Attach the package and use:
library("PCAPAM50")
Maintained by
Praveen-Kumar Raj-Kumar
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2024-07-08
Latest Update: 2025-01-09
Description:
Accurate classification of breast cancer tumors based on gene expression data is not a trivial task, and it lacks standard practices.The 'PAM50' classifier, which uses 50 gene centroid correlation distances to classify tumors, faces challenges with balancing estrogen receptor (ER) status and gene centering. The 'PCAPAM50' package leverages principal component analysis and iterative 'PAM50' calls to create a gene expression-based ER-balanced subset for gene centering, avoiding the use of protein expression-based ER data resulting into an enhanced Breast Cancer subtyping.
How to cite:
Praveen-Kumar Raj-Kumar (2024). PCAPAM50: Enhanced 'PAM50' Subtyping of Breast Cancer. R package version 1.0.3, https://cran.r-project.org/web/packages/PCAPAM50. Accessed 26 Jun. 2026.
Previous versions and publish date:
1.0.0 (2024-07-08 07:30), 1.0.1 (2024-07-09 09:50), 1.0.2 (2024-11-24 04:10)
Other packages that cited PCAPAM50 R package
View PCAPAM50 citation profile
Other R packages that PCAPAM50 depends, imports, suggests or enhances
Complete documentation for PCAPAM50
Functions, R codes and Examples using the PCAPAM50 R package
Full PCAPAM50 package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
colormap  
Color Palettes using Colormaps Node Module
Allows to generate colors from palettes defined in the colormap module of 'Node.js'. (see ...
Download / Learn more Package Citations See dependency  
infotheo  
Information-Theoretic Measures
Implements various measures of information theory based on several entropy estimators. ...
Download / Learn more Package Citations See dependency  
poptrend  
Estimate Smooth and Linear Trends from Population Count Survey Data
Functions to estimate and plot smooth or linear population trends, or population indices, from anim ...
Download / Learn more Package Citations See dependency  
ggblanket  
Simplify 'ggplot2' Visualisation
Simplify 'ggplot2' visualisation with 'ggblanket' wrapper functions. ...
Download / Learn more Package Citations See dependency  
tactile  
New and Extended Plots, Methods, and Panel Functions for 'lattice'
Extensions to 'lattice', providing new high-level functions, methods for existing functions, panel f ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA