Other packages > Find by keyword >

PANACEA  

Personalized Network-Based Anti-Cancer Therapy Evaluation
View on CRAN: Click here


Download and install PANACEA package within the R console
Install from CRAN:
install.packages("PANACEA")

Install from Github:
library("remotes")
install_github("cran/PANACEA")

Install by package version:
library("remotes")
install_version("PANACEA", "1.0.1")



Attach the package and use:
library("PANACEA")
Maintained by
Ege Ulgen
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-05-02
Latest Update: 2023-08-19
Description:
Identification of the most appropriate pharmacotherapy for each patient based on genomic alterations is a major challenge in personalized oncology. 'PANACEA' is a collection of personalized anti-cancer drug prioritization approaches utilizing network methods. The methods utilize personalized "driverness" scores from 'driveR' to rank drugs, mapping these onto a protein-protein interaction network. The "distance-based" method scores each drug based on these scores and distances between drugs and genes to rank given drugs. The "RWR" method propagates these scores via a random-walk with restart framework to rank the drugs. The methods are described in detail in Ulgen E, Ozisik O, Sezerman OU. 2023. PANACEA: network-based methods for pharmacotherapy prioritization in personalized oncology. Bioinformatics .
How to cite:
Ege Ulgen (2023). PANACEA: Personalized Network-Based Anti-Cancer Therapy Evaluation. R package version 1.0.1, https://cran.r-project.org/web/packages/PANACEA
Previous versions and publish date:
1.0.0 (2023-05-02 23:10)
Other packages that cited PANACEA R package
View PANACEA citation profile
Other R packages that PANACEA depends, imports, suggests or enhances
Functions, R codes and Examples using the PANACEA R package
Full PANACEA package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
interplex  
Coercion Methods for Simplicial Complex Data Structures
Computational topology, which enables topological data analysis (TDA), makes pervasive use of abstr ...
Download / Learn more Package Citations See dependency  
largeList  
Serialization Interface for Large List Objects
Functions to write or append a R list to a file, as well as read, remove, modify elements from it wi ...
Download / Learn more Package Citations See dependency  
MPCI  
Multivariate Process Capability Indices (MPCI)
It performs the followings Multivariate Process Capability Indices: Shahriari et al. (1995) Multivar ...
Download / Learn more Package Citations See dependency  
PCL  
Proximal Causal Learning
We fit causal models using proxies. We implement two stage proximal least squares estimator. E.J. Tc ...
Download / Learn more Package Citations See dependency  
DelayedEffect.Design  
Sample Size and Power Calculations using the APPLE, SEPPLE, APPLE+ and SEPPLE+ Methods
Provides sample size and power calculations when the treatment time-lag effect is present and the la ...
Download / Learn more Package Citations See dependency  

22,431

R Packages

191,269

Dependencies

56,139

Author Associations

22,432

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net. Contact Us / Suggestions / Concerns