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OryzaProbe  

Rice Microarray Probe ID Conversion, from Probe ID to RAP-DB ID
View on CRAN: Click here


Download and install OryzaProbe package within the R console
Install from CRAN:
install.packages("OryzaProbe")

Install from Github:
library("remotes")
install_github("cran/OryzaProbe")

Install by package version:
library("remotes")
install_version("OryzaProbe", "0.1.0")



Attach the package and use:
library("OryzaProbe")
Maintained by
Youming Liu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-10-17
Latest Update: 2022-10-17
Description:
Microarray probe ID is not convenient for further enrichment analysis and target gene selection. The package is created for the rice microarray probe ID conversion. This package can convert microarray probe ID from GPL6864 , GPL8852 , and GPL2025 platforms to RAP-DB ID. RAP-DB "The Rice Annotation Project Database" is a well-known database for rice Oryza sativa, and the gene ID in this database is widely used in many areas related to rice research. For multiple probes representing a single gene, This package can merge them by taking the mean, max, or min value of these probes. Or we can keep multiple probes by appending sequence numbers to duplicate the RAP-DB ID.
How to cite:
Youming Liu (2022). OryzaProbe: Rice Microarray Probe ID Conversion, from Probe ID to RAP-DB ID. R package version 0.1.0, https://cran.r-project.org/web/packages/OryzaProbe. Accessed 22 Dec. 2024.
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Complete documentation for OryzaProbe
Functions, R codes and Examples using the OryzaProbe R package
Some associated functions: probeConvert . 
Some associated R codes: ProbeConvert.R .  Full OryzaProbe package functions and examples
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