Other packages > Find by keyword >

OpEnCAST  

Optimized Ensemble Model for C and A Methylation Search in Plant
View on CRAN: Click here


Download and install OpEnCAST package within the R console
Install from CRAN:
install.packages("OpEnCAST")

Install from Github:
library("remotes")
install_github("cran/OpEnCAST")

Install by package version:
library("remotes")
install_version("OpEnCAST", "0.1.1")



Attach the package and use:
library("OpEnCAST")
Maintained by
Abhik Sarkar
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-01-08
Latest Update: 2026-01-08
Description:
DNA methylation is an important epigenetic process that regulates gene activity through chemical modifications of DNA without changing its sequence. 'OpEnCAST' is a plant-specificensemble-based prediction package that identifies 4mC, 5mC and 6mA methylation sites directly from DNA sequences. It combines multiple machine learning algorithms trained on monocot (Oryza sp.) and dicot (Arabidopsis sp.) reference models to deliver accurate predictions. This methodology is being inspired by the ensemble algorithm for methylation prediction developed by Wang et al. (2022) <doi:10.1186/s12859-022-04756-1>.
How to cite:
Abhik Sarkar (2026). OpEnCAST: Optimized Ensemble Model for C and A Methylation Search in Plant. R package version 0.1.1, https://cran.r-project.org/web/packages/OpEnCAST. Accessed 28 Jul. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited OpEnCAST R package
View OpEnCAST citation profile
Other R packages that OpEnCAST depends, imports, suggests or enhances
Complete documentation for OpEnCAST
Functions, R codes and Examples using the OpEnCAST R package
Full OpEnCAST package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

textmineR  
Functions for Text Mining and Topic Modeling
An aid for text mining in R, with a syntax that should be familiar to experienced R users. Provides ...
Download / Learn more Package Citations See dependency  
ExplodeLayout  
Calculate Exploded Coordinates Based on Original Node Coordinates and Node Clustering Membership
Current layout algorithms such as Kamada Kawai do not take into consideration disjoint clusters in a ...
Download / Learn more Package Citations See dependency  
openintro  
Datasets and Supplemental Functions from 'OpenIntro' Textbooks and Labs
Supplemental functions and data for 'OpenIntro' resources, which includes open-source textbooks and ...
Download / Learn more Package Citations See dependency  
daqapo  
Data Quality Assessment for Process-Oriented Data
Provides a variety of methods to identify data quality issues in process-oriented data, which are us ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
NPBayesImputeCat  
Non-Parametric Bayesian Multiple Imputation for Categorical Data
These routines create multiple imputations of missing at random categorical data, and create multipl ...
Download / Learn more Package Citations See dependency  

27,987

R Packages

239,283

Dependencies

74,234

Author Associations

27,988

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA