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OpEnCAST  

Optimized Ensemble Model for C and A Methylation Search in Plant
View on CRAN: Click here


Download and install OpEnCAST package within the R console
Install from CRAN:
install.packages("OpEnCAST")

Install from Github:
library("remotes")
install_github("cran/OpEnCAST")

Install by package version:
library("remotes")
install_version("OpEnCAST", "0.1.1")



Attach the package and use:
library("OpEnCAST")
Maintained by
Abhik Sarkar
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-01-08
Latest Update: 2026-01-08
Description:
DNA methylation is an important epigenetic process that regulates gene activity through chemical modifications of DNA without changing its sequence. 'OpEnCAST' is a plant-specificensemble-based prediction package that identifies 4mC, 5mC and 6mA methylation sites directly from DNA sequences. It combines multiple machine learning algorithms trained on monocot (Oryza sp.) and dicot (Arabidopsis sp.) reference models to deliver accurate predictions. This methodology is being inspired by the ensemble algorithm for methylation prediction developed by Wang et al. (2022) <doi:10.1186/s12859-022-04756-1>.
How to cite:
Abhik Sarkar (2026). OpEnCAST: Optimized Ensemble Model for C and A Methylation Search in Plant. R package version 0.1.1, https://cran.r-project.org/web/packages/OpEnCAST. Accessed 05 Jun. 2026.
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Complete documentation for OpEnCAST
Functions, R codes and Examples using the OpEnCAST R package
Full OpEnCAST package functions and examples
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