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OlinkAnalyze
View on CRAN: Click
here
Download and install OlinkAnalyze package within the R console
Install from CRAN:
install.packages("OlinkAnalyze")
Install from Github:
library("remotes")
install_github("cran/OlinkAnalyze")
Install by package version:
library("remotes")
install_version("OlinkAnalyze", "4.2.0")
Attach the package and use:
library("OlinkAnalyze")
Maintained by
Kathleen Nevola
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.OlinkAnalyze . OlinkAnalyze results . OlinkAnalyze.pdf . OlinkAnalyze_4.2.0.tar.gz . OlinkAnalyze_4.2.0.zip . OlinkAnalyze_4.2.0.zip . OlinkAnalyze_4.2.0.zip . OlinkAnalyze_4.2.0.tgz . OlinkAnalyze_4.2.0.tgz . OlinkAnalyze_4.2.0.tgz . OlinkAnalyze_4.2.0.tgz . OlinkAnalyze archive . https://CRAN.R-project.org/package=OlinkAnalyze .
First Published: 2022-02-10
Latest Update: 2024-02-22
Description:
A collection of functions to facilitate analysis of proteomic
data from Olink, primarily NPX data that has been exported from Olink
Software. The functions also work on QUANT data from
Olink by log- transforming the QUANT data. The functions are focused
on reading data, facilitating data wrangling and quality control
analysis, performing statistical analysis and generating figures to
visualize the results of the statistical analysis. The goal of this
package is to help users extract biological insights from proteomic
data run on the Olink platform.
How to cite:
Kathleen Nevola (2022). OlinkAnalyze: Facilitate Analysis of Proteomic Data from Olink. R package version 4.2.0, https://cran.r-project.org/web/packages/OlinkAnalyze. Accessed 30 Apr. 2025.
Previous versions and publish date:
3.0.0 (2022-02-10 20:20), 3.1.0 (2022-06-10 15:50), 3.2.0 (2022-11-01 02:04), 3.2.2 (2022-11-16 01:30), 3.3.0 (2023-01-24 22:50), 3.3.1 (2023-02-27 21:22), 3.4.0 (2023-04-26 22:22), 3.4.1 (2023-05-08 21:10), 3.5.1 (2023-08-08 23:00), 3.6.0 (2023-11-03 21:00), 3.6.2 (2024-01-13 14:00), 3.7.0 (2024-02-22 09:10), 3.8.2 (2024-06-27 18:20), 4.0.1 (2024-09-24 13:50), 4.0.2 (2024-11-22 17:20), 4.1.2 (2025-01-27 22:00)
Other packages that cited OlinkAnalyze R package
View OlinkAnalyze citation profile
Other R packages that OlinkAnalyze depends,
imports, suggests or enhances
Complete documentation for OlinkAnalyze
Functions, R codes and Examples using
the OlinkAnalyze R package
Some associated functions: check_data_completeness . manifest . npx_data1 . npx_data2 . olink_anova . olink_anova_posthoc . olink_boxplot . olink_bridgeselector . olink_color_discrete . olink_color_gradient . olink_displayPlateDistributions . olink_displayPlateLayout . olink_dist_plot . olink_fill_discrete . olink_fill_gradient . olink_heatmap_plot . olink_lmer . olink_lmer_plot . olink_lmer_posthoc . olink_normalization . olink_one_non_parametric . olink_one_non_parametric_posthoc . olink_ordinalRegression . olink_ordinalRegression_posthoc . olink_pal . olink_pathway_enrichment . olink_pathway_heatmap . olink_pathway_visualization . olink_pca_plot . olink_plate_randomizer . olink_qc_plot . olink_ttest . olink_umap_plot . olink_volcano_plot . olink_wilcox . pipe . print_and_capture . read_NPX . set_plot_theme .
Some associated R codes: Olink_anova.R . Olink_boxplot.R . Olink_bridgeselector.R . Olink_color.R . Olink_heatmap.R . Olink_normalization.R . Olink_one_non_parametric.R . Olink_ordinalRegression.R . Olink_plate_randomizer.R . Olink_theme.R . Olink_ttest.R . Olink_wilcox.R . Read_NPX_data.R . Volcano_plot.R . data.R . dist_plot.R . globals.R . linear_mixed_model.R . npxProcessing.R . olink_Pathway_Enrichment.R . olink_Pathway_Heatmap.R . olink_Pathway_Visualization.R . olink_qc_plot.R . pca_plot.R . print_and_capture.R . umap_plot.R . utils-pipe.R . Full OlinkAnalyze package functions and examples
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