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OlinkAnalyze  

Facilitate Analysis of Proteomic Data from Olink
View on CRAN: Click here


Download and install OlinkAnalyze package within the R console
Install from CRAN:
install.packages("OlinkAnalyze")

Install from Github:
library("remotes")
install_github("cran/OlinkAnalyze")

Install by package version:
library("remotes")
install_version("OlinkAnalyze", "4.2.0")



Attach the package and use:
library("OlinkAnalyze")
Maintained by
Kathleen Nevola
[Scholar Profile | Author Map]
First Published: 2022-02-10
Latest Update: 2024-02-22
Description:
A collection of functions to facilitate analysis of proteomic data from Olink, primarily NPX data that has been exported from Olink Software. The functions also work on QUANT data from Olink by log- transforming the QUANT data. The functions are focused on reading data, facilitating data wrangling and quality control analysis, performing statistical analysis and generating figures to visualize the results of the statistical analysis. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.
How to cite:
Kathleen Nevola (2022). OlinkAnalyze: Facilitate Analysis of Proteomic Data from Olink. R package version 4.2.0, https://cran.r-project.org/web/packages/OlinkAnalyze. Accessed 30 Apr. 2025.
Previous versions and publish date:
3.0.0 (2022-02-10 20:20), 3.1.0 (2022-06-10 15:50), 3.2.0 (2022-11-01 02:04), 3.2.2 (2022-11-16 01:30), 3.3.0 (2023-01-24 22:50), 3.3.1 (2023-02-27 21:22), 3.4.0 (2023-04-26 22:22), 3.4.1 (2023-05-08 21:10), 3.5.1 (2023-08-08 23:00), 3.6.0 (2023-11-03 21:00), 3.6.2 (2024-01-13 14:00), 3.7.0 (2024-02-22 09:10), 3.8.2 (2024-06-27 18:20), 4.0.1 (2024-09-24 13:50), 4.0.2 (2024-11-22 17:20), 4.1.2 (2025-01-27 22:00)
Other packages that cited OlinkAnalyze R package
View OlinkAnalyze citation profile
Other R packages that OlinkAnalyze depends, imports, suggests or enhances
Complete documentation for OlinkAnalyze
Functions, R codes and Examples using the OlinkAnalyze R package
Some associated functions: check_data_completeness . manifest . npx_data1 . npx_data2 . olink_anova . olink_anova_posthoc . olink_boxplot . olink_bridgeselector . olink_color_discrete . olink_color_gradient . olink_displayPlateDistributions . olink_displayPlateLayout . olink_dist_plot . olink_fill_discrete . olink_fill_gradient . olink_heatmap_plot . olink_lmer . olink_lmer_plot . olink_lmer_posthoc . olink_normalization . olink_one_non_parametric . olink_one_non_parametric_posthoc . olink_ordinalRegression . olink_ordinalRegression_posthoc . olink_pal . olink_pathway_enrichment . olink_pathway_heatmap . olink_pathway_visualization . olink_pca_plot . olink_plate_randomizer . olink_qc_plot . olink_ttest . olink_umap_plot . olink_volcano_plot . olink_wilcox . pipe . print_and_capture . read_NPX . set_plot_theme . 
Some associated R codes: Olink_anova.R . Olink_boxplot.R . Olink_bridgeselector.R . Olink_color.R . Olink_heatmap.R . Olink_normalization.R . Olink_one_non_parametric.R . Olink_ordinalRegression.R . Olink_plate_randomizer.R . Olink_theme.R . Olink_ttest.R . Olink_wilcox.R . Read_NPX_data.R . Volcano_plot.R . data.R . dist_plot.R . globals.R . linear_mixed_model.R . npxProcessing.R . olink_Pathway_Enrichment.R . olink_Pathway_Heatmap.R . olink_Pathway_Visualization.R . olink_qc_plot.R . pca_plot.R . print_and_capture.R . umap_plot.R . utils-pipe.R .  Full OlinkAnalyze package functions and examples
Downloads during the last 30 days
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