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ORscraper  

Extract Information from Clinical Reports from 'Oncomine Reporter' and NCBI 'ClinVar'
View on CRAN: Click here


Download and install ORscraper package within the R console
Install from CRAN:
install.packages("ORscraper")

Install from Github:
library("remotes")
install_github("cran/ORscraper")

Install by package version:
library("remotes")
install_version("ORscraper", "0.1.1")



Attach the package and use:
library("ORscraper")
Maintained by
Samuel González
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-01-16
Latest Update: 2026-01-16
Description:
Clinical reports generated by 'Oncomine Reporter' software contain critical data in unstructured PDF format, making manual extraction time-consuming and error-prone. 'ORscraper' provides a coherent suite of functions to automate this process, allowing researchers to parse reports, identify key biomarkers, extract genetic variant tables, and filter results. It also integrates with the NCBI 'ClinVar' API <https://www.ncbi.nlm.nih.gov/clinvar/> to enrich extracted data.
How to cite:
Samuel González (2026). ORscraper: Extract Information from Clinical Reports from 'Oncomine Reporter' and NCBI 'ClinVar'. R package version 0.1.1, https://cran.r-project.org/web/packages/ORscraper. Accessed 24 Oct. 2026.
Previous versions and publish date:
0.1.0 (2026-01-16 12:30), (2026-07-09 08:15)
Other packages that cited ORscraper R package
View ORscraper citation profile
Other R packages that ORscraper depends, imports, suggests or enhances
Complete documentation for ORscraper
Functions, R codes and Examples using the ORscraper R package
Full ORscraper package functions and examples
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