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NeighborFinder  

Find Neighbor Species of a Bacteria of Interest in the Human Gut Microbiota
View on CRAN: Click here


Download and install NeighborFinder package within the R console
Install from CRAN:
install.packages("NeighborFinder")

Install from Github:
library("remotes")
install_github("cran/NeighborFinder")

Install by package version:
library("remotes")
install_version("NeighborFinder", "1.0.1")



Attach the package and use:
library("NeighborFinder")
Maintained by
Mathilde Sola
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-06-30
Latest Update: 2026-06-30
Description:
Implementation of the local approach described in Sola et al., 2026 <doi:10.64898/2025.12.05.692507> to identify companion species of a bacteria of interest. From several abundance tables of metagenomic data, 'NeighborFinder' suggests a shortlist of companion species based on the integration of results. A visualization via a network is proposed.
How to cite:
Mathilde Sola (2026). NeighborFinder: Find Neighbor Species of a Bacteria of Interest in the Human Gut Microbiota. R package version 1.0.1, https://cran.r-project.org/web/packages/NeighborFinder. Accessed 24 Oct. 2026.
Previous versions and publish date:
No previous versions
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Complete documentation for NeighborFinder
Functions, R codes and Examples using the NeighborFinder R package
Full NeighborFinder package functions and examples
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