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NMF  

Algorithms and Framework for Nonnegative Matrix Factorization (NMF)
View on CRAN: Click here


Download and install NMF package within the R console
Install from CRAN:
install.packages("NMF")

Install from Github:
library("remotes")
install_github("cran/NMF")

Install by package version:
library("remotes")
install_version("NMF", "0.28")



Attach the package and use:
library("NMF")
Maintained by
Nicolas Sauwen
[Scholar Profile | Author Map]
First Published: 2009-11-23
Latest Update: 2024-02-08
Description:
Provides a framework to perform Non-negative Matrix Factorization (NMF). The package implements a set of already published algorithms and seeding methods, and provides a framework to test, develop and plug new/custom algorithms. Most of the built-in algorithms have been optimized in C++, and the main interface function provides an easy way of performing parallel computations on multicore machines.
How to cite:
Nicolas Sauwen (2009). NMF: Algorithms and Framework for Nonnegative Matrix Factorization (NMF). R package version 0.28, https://cran.r-project.org/web/packages/NMF. Accessed 08 Apr. 2025.
Previous versions and publish date:
0.2.2 (2009-11-26 12:43), 0.2.3 (2010-01-07 16:40), 0.2.4 (2010-01-12 22:41), 0.2 (2009-11-23 20:19), 0.3.1 (2010-02-08 10:02), 0.3.3 (2010-03-16 18:06), 0.4.1 (2010-05-11 16:41), 0.4.3 (2010-05-22 08:35), 0.4.4 (2010-06-10 16:05), 0.4.6 (2010-06-18 17:13), 0.4.7 (2010-06-23 16:16), 0.4.8 (2010-06-28 16:29), 0.4 (2010-04-15 15:49), 0.5.02 (2010-08-25 15:53), 0.5.05 (2011-11-04 08:32), 0.5.06 (2011-12-09 10:16), 0.5 (2010-08-20 22:29), 0.16.1 (2013-03-27 11:14), 0.16.2 (2013-03-27 23:22), 0.16.6 (2013-05-13 15:04), 0.17 (2013-05-15 19:12), 0.20.2 (2014-03-09 18:39), 0.20.5 (2014-03-18 11:43), 0.20.6 (2015-05-26 08:12), 0.20 (2013-11-01 17:54), 0.21.0 (2018-03-06 17:35), 0.22.0 (2020-02-12 13:40), 0.23.0 (2020-08-01 07:10), 0.24.0 (2022-03-30 00:10), 0.25 (2022-11-18 15:30), 0.26 (2023-03-20 16:30), 0.27 (2024-02-08 18:50)
Other packages that cited NMF R package
View NMF citation profile
Other R packages that NMF depends, imports, suggests or enhances
Complete documentation for NMF
Functions, R codes and Examples using the NMF R package
Some associated functions: Frobenius-nmf . KL-nmf . NMF-class . NMF-defunct . NMF-deprecated . NMF-package . NMFList-class . NMFOffset-class . NMFSeed-class . NMFStrategy-class . NMFStrategy . NMFStrategyFunction-class . NMFStrategyIterative-class . NMFfit-class . NMFfitX-class . NMFfitX . NMFfitX1-class . NMFfitXn-class . NMFns-class . NMFstd-class . RNG . SNMF-nmf . Strategy-class . advanced . aheatmap . algorithm-commaNMFList-method . algorithmic . assess . atrack . basis-coef-methods . basiscor . bioc . c-commaNMF-method . canFit . ccBreaks . ccPalette . ccRamp . ccSpec . checkErrors . cluster_mat . connectivity . consensus-commaNMFfitX1-method . consensus-commaNMFfitXn-method . consensushc . cophcor . cutdendro . deviance . dimnames . dims . dispersion . dot-fcnnls . esGolub . fcnnls . fit . fitted . foreach . gfile . grid . heatmaps . inplace . isCRANcheck . latex . lsNMF-nmf . lverbose . match_atrack . nmf-compare . nmf.equal . nmf . nmfAlgorithm . nmfApply . nmfCheck . nmfEstimateRank . nmfFormals . nmfModel . nmfObject . nmfReport . nmfSeed . nmfWrapper . nmf_update_KL . nmf_update_euclidean . nneg . nsNMF-nmf . objective-commaNMFfit-method . offset-commaNMFOffset-method . offset-commaNMFfit-method . offset-nmf . options . parallel . parse_formula . plot-commaNMFfit-commamissing-method . predict . profplot . purity . randomize . registry-algorithm . residuals . revPalette . rmatrix . rnmf . rss . runtime-commaNMFList-method . runtime.all-commaNMFfitXn-method . scale.NMF . scores . seed . setNMFMethod . setNMFSeed . setup . show-commaNMF-method . show-commaNMFList-method . show-commaNMFOffset-method . show-commaNMFSeed-method . show-commaNMFStrategyIterative-method . show-commaNMFfit-method . show-commaNMFfitX-method . show-commaNMFfitX1-method . show-commaNMFfitXn-method . show-commaNMFns-method . silhouette.NMF . smoothing . sparseness . staticVar . stop-NMF . subset-NMF . syntheticNMF . t.NMF . terms-internal . terms . txtProgressBar . types . utils . 
Some associated R codes: Bioc-layer.R . NMF-class.R . NMFOffset-class.R . NMFSeed-class.R . NMFSet-class.R . NMFStrategy-class.R . NMFStrategyFunction-class.R . NMFStrategyIterative-class.R . NMFfit-class.R . NMFns-class.R . NMFplots.R . NMFstd-class.R . aheatmap.R . algorithmic.R . algorithms-base.R . algorithms-lnmf.R . algorithms-lsnmf.R . algorithms-pe-nmf.R . algorithms-siNMF.R . algorithms-snmf.R . atracks.R . colorcode.R . data.R . extractFeatures.R . fixed-terms.R . grid.R . heatmaps.R . nmf-package.R . nmf.R . nmfModel.R . options.R . parallel.R . registry-algorithms.R . registry-seed.R . registry.R . rmatrix.R . rnmf.R . run.R . seed-base.R . seed-ica.R . seed-nndsvd.R . setNMFClass.R . simulation.R . tests.R . transforms.R . utils.R . versions.R . vignetteFunctions.R .  Full NMF package functions and examples
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