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NACHO
View on CRAN: Click
here
Download and install NACHO package within the R console
Install from CRAN:
install.packages("NACHO")
Install from Github:
library("remotes")
install_github("cran/NACHO")
Install by package version:
library("remotes")
install_version("NACHO", "2.0.6")
Attach the package and use:
library("NACHO")
Maintained by
Mickaël Canouil
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.NACHO . https://github.com/mcanouil/NACHO/issues . https://github.com/mcanouil/NACHO/ . https://m.canouil.dev/NACHO/ . NACHO citation info . NACHO results . NACHO.pdf . NACHO-analysis . NACHO . NACHO_2.0.6.tar.gz . NACHO_2.0.6.zip . NACHO_2.0.6.zip . NACHO_2.0.6.zip . NACHO_2.0.6.tgz . NACHO_2.0.6.tgz . NACHO_2.0.6.tgz . NACHO_2.0.6.tgz . NACHO_2.0.6.tgz . NACHO_2.0.6.tgz . NACHO archive . https://CRAN.R-project.org/package=NACHO .
First Published: 2019-04-28
Latest Update: 2024-01-12
Description:
NanoString nCounter data are gene expression assays
where there is no need for the use of enzymes or amplification
protocols and work with fluorescent barcodes (Geiss et al. (2018)
). Each barcode is assigned a
messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its
target can be counted. As a result each count of a specific barcode
represents the presence of its target mRNA/miRNA. 'NACHO' (NAnoString
quality Control dasHbOard) is able to analyse the exported NanoString
nCounter data and facilitates the user in performing a quality
control. 'NACHO' does this by visualising quality control metrics,
expression of control genes, principal components and sample specific
size factors in an interactive web application.
How to cite:
Mickaël Canouil (2019). NACHO: NanoString Quality Control Dashboard. R package version 2.0.6, https://cran.r-project.org/web/packages/NACHO. Accessed 02 Mar. 2025.
Previous versions and publish date:
0.5.5 (2019-04-28 11:00), 0.5.6 (2019-04-29 21:30), 0.6.0 (2019-10-07 14:10), 0.6.1 (2019-10-12 09:30), 1.0.0 (2020-01-09 21:00), 1.0.1 (2020-05-27 00:20), 1.0.2 (2021-01-05 19:40), 1.1.0 (2021-01-14 16:10), 2.0.0 (2022-05-31 11:20), 2.0.1 (2022-11-25 01:10), 2.0.2 (2022-12-06 01:32), 2.0.4 (2023-04-01 16:00), 2.0.5 (2023-08-07 21:30)
Other packages that cited NACHO R package
View NACHO citation profile
Other R packages that NACHO depends,
imports, suggests or enhances
Complete documentation for NACHO
Functions, R codes and Examples using
the NACHO R package
Some associated functions: GSE74821 . NACHO-package . autoplot.nacho . autoplot . check_outliers . deploy . load_rcc . normalise . print.nacho . render . visualise .
Some associated R codes: GSE74821.R . NACHO-package.R . autoplot.R . check_outliers.R . deploy.R . factor_calculation.R . find_housekeeping.R . format_counts.R . format_tag_content.R . geometric_housekeeping.R . geometric_mean.R . geometric_probes.R . load_rcc.R . norm_geo.R . norm_glm.R . normalise.R . normalise_counts.R . print.R . probe_exclusion.R . qc_features.R . qc_imaging.R . qc_limit_detection.R . qc_pca.R . qc_positive_control.R . qc_rcc.R . read_rcc.R . read_tags.R . render.R . utils.R . visualise.R . Full NACHO package functions and examples
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