Other packages > Find by keyword >

NACHO  

NanoString Quality Control Dashboard
View on CRAN: Click here


Download and install NACHO package within the R console
Install from CRAN:
install.packages("NACHO")

Install from Github:
library("remotes")
install_github("cran/NACHO")

Install by package version:
library("remotes")
install_version("NACHO", "2.0.6")



Attach the package and use:
library("NACHO")
Maintained by
Mickaël Canouil
[Scholar Profile | Author Map]
First Published: 2019-04-28
Latest Update: 2024-01-12
Description:
NanoString nCounter data are gene expression assays where there is no need for the use of enzymes or amplification protocols and work with fluorescent barcodes (Geiss et al. (2018) ). Each barcode is assigned a messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its target can be counted. As a result each count of a specific barcode represents the presence of its target mRNA/miRNA. 'NACHO' (NAnoString quality Control dasHbOard) is able to analyse the exported NanoString nCounter data and facilitates the user in performing a quality control. 'NACHO' does this by visualising quality control metrics, expression of control genes, principal components and sample specific size factors in an interactive web application.
How to cite:
Mickaël Canouil (2019). NACHO: NanoString Quality Control Dashboard. R package version 2.0.6, https://cran.r-project.org/web/packages/NACHO. Accessed 03 Apr. 2025.
Previous versions and publish date:
0.5.5 (2019-04-28 11:00), 0.5.6 (2019-04-29 21:30), 0.6.0 (2019-10-07 14:10), 0.6.1 (2019-10-12 09:30), 1.0.0 (2020-01-09 21:00), 1.0.1 (2020-05-27 00:20), 1.0.2 (2021-01-05 19:40), 1.1.0 (2021-01-14 16:10), 2.0.0 (2022-05-31 11:20), 2.0.1 (2022-11-25 01:10), 2.0.2 (2022-12-06 01:32), 2.0.4 (2023-04-01 16:00), 2.0.5 (2023-08-07 21:30)
Other packages that cited NACHO R package
View NACHO citation profile
Other R packages that NACHO depends, imports, suggests or enhances
Complete documentation for NACHO
Downloads during the last 30 days
03/0403/0503/0603/0703/0803/0903/1003/1103/1203/1303/1403/1503/1603/1703/1803/1903/2003/2103/2203/2303/2403/2503/2603/2703/2803/2903/3003/3104/01Downloads for NACHO0510152025303540TrendBars

Today's Hot Picks in Authors and Packages

RobustANOVA  
Robust One-Way ANOVA Tests under Heteroscedasticity and Nonnormality
Robust tests (RW, RPB and RGF) are provided for testing the equality of several long-tailed symmetri ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
RZooRoH  
Partitioning of Individual Autozygosity into Multiple Homozygous-by-Descent Classes
Functions to identify Homozygous-by-Descent (HBD) segments associated with runs of homozygosity (ROH ...
Download / Learn more Package Citations See dependency  
automl  
Deep Learning with Metaheuristic
Fits from simple regression to highly customizable deep neural networks either with gradient descen ...
Download / Learn more Package Citations See dependency  
jointDiag  
Joint Approximate Diagonalization of a Set of Square Matrices
Different algorithms to perform approximate joint diagonalization of a finite set of square matrice ...
Download / Learn more Package Citations See dependency  
RI2by2  
Randomization Inference for Treatment Effects on a Binary Outcome
Computes attributable effects based confidence interval, permutation test confidence interval, or as ...
Download / Learn more Package Citations See dependency  

23,990

R Packages

207,311

Dependencies

64,809

Author Associations

23,991

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA