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NACHO  

NanoString Quality Control Dashboard
View on CRAN: Click here


Download and install NACHO package within the R console
Install from CRAN:
install.packages("NACHO")

Install from Github:
library("remotes")
install_github("cran/NACHO")

Install by package version:
library("remotes")
install_version("NACHO", "2.0.6")



Attach the package and use:
library("NACHO")
Maintained by
Mickaël Canouil
[Scholar Profile | Author Map]
First Published: 2019-04-28
Latest Update: 2024-01-12
Description:
NanoString nCounter data are gene expression assays where there is no need for the use of enzymes or amplification protocols and work with fluorescent barcodes (Geiss et al. (2018) ). Each barcode is assigned a messenger-RNA/micro-RNA (mRNA/miRNA) which after bonding with its target can be counted. As a result each count of a specific barcode represents the presence of its target mRNA/miRNA. 'NACHO' (NAnoString quality Control dasHbOard) is able to analyse the exported NanoString nCounter data and facilitates the user in performing a quality control. 'NACHO' does this by visualising quality control metrics, expression of control genes, principal components and sample specific size factors in an interactive web application.
How to cite:
Mickaël Canouil (2019). NACHO: NanoString Quality Control Dashboard. R package version 2.0.6, https://cran.r-project.org/web/packages/NACHO. Accessed 03 May. 2025.
Previous versions and publish date:
0.5.5 (2019-04-28 11:00), 0.5.6 (2019-04-29 21:30), 0.6.0 (2019-10-07 14:10), 0.6.1 (2019-10-12 09:30), 1.0.0 (2020-01-09 21:00), 1.0.1 (2020-05-27 00:20), 1.0.2 (2021-01-05 19:40), 1.1.0 (2021-01-14 16:10), 2.0.0 (2022-05-31 11:20), 2.0.1 (2022-11-25 01:10), 2.0.2 (2022-12-06 01:32), 2.0.4 (2023-04-01 16:00), 2.0.5 (2023-08-07 21:30)
Other packages that cited NACHO R package
View NACHO citation profile
Other R packages that NACHO depends, imports, suggests or enhances
Complete documentation for NACHO
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