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MiSPU  

Microbiome Based Sum of Powered Score (MiSPU) Tests
View on CRAN: Click here


Download and install MiSPU package within the R console
Install from CRAN:
install.packages("MiSPU")

Install from Github:
library("remotes")
install_github("cran/MiSPU")

Install by package version:
library("remotes")
install_version("MiSPU", "1.0")



Attach the package and use:
library("MiSPU")
Maintained by
Chong Wu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-03-18
Latest Update: 2016-03-18
Description:
There is an increasing interest in investigating how the compositions of microbial communities are associated with human health and disease. In this package, we present a novel global testing method called aMiSPU, that is highly adaptive and thus high powered across various scenarios, alleviating the issue with the choice of a phylogenetic distance. Our simulations and real data analysis demonstrated that aMiSPU test was often more powerful than several competing methods while correctly controlling type I error rates.
How to cite:
Chong Wu (2016). MiSPU: Microbiome Based Sum of Powered Score (MiSPU) Tests. R package version 1.0, https://cran.r-project.org/web/packages/MiSPU
Previous versions and publish date:
No previous versions
Other packages that cited MiSPU R package
View MiSPU citation profile
Other R packages that MiSPU depends, imports, suggests or enhances
Functions, R codes and Examples using the MiSPU R package
Some associated functions: Dirichlet . GUniFrac . MiSPU-package . MiSPU . correspLeaves . dd . ranking . simulateData . throat.meta . throat.otu.tab . throat.tree . 
Some associated R codes: GUniFrac.R . MiSPU.R . MiSPUR.R . Ranking.R . RcppExports.R . simulateData.R .  Full MiSPU package functions and examples
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