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MiRKAT
View on CRAN: Click
here
Download and install MiRKAT package within the R console
Install from CRAN:
install.packages("MiRKAT")
Install from Github:
library("remotes")
install_github("cran/MiRKAT")
Install by package version:
library("remotes")
install_version("MiRKAT", "1.2.3")
Attach the package and use:
library("MiRKAT")
Maintained by
Anna Plantinga
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-07-25
Latest Update: 2023-02-17
Description:
Test for overall association between microbiome composition data
and phenotypes via phylogenetic kernels. The phenotype can be univariate
continuous or binary (Zhao et al. (2015) ),
survival outcomes (Plantinga et al. (2017) ),
multivariate (Zhan et al. (2017) ) and
structured phenotypes (Zhan et al. (2017) ).
The package can also use robust regression (unpublished work) and
integrated quantile regression (Wang et al. (2021) ).
In each case, the microbiome community effect is modeled nonparametrically
through a kernel function, which can incorporate phylogenetic tree information.
How to cite:
Anna Plantinga (2017). MiRKAT: Microbiome Regression-Based Kernel Association Tests. R package version 1.2.3, https://cran.r-project.org/web/packages/MiRKAT. Accessed 02 Feb. 2025.
Previous versions and publish date:
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Other R packages that MiRKAT depends,
imports, suggests or enhances
Complete documentation for MiRKAT
Functions, R codes and Examples using
the MiRKAT R package
Some associated functions: CSKAT . D2K . GLMMMiRKAT . KRV . MMiRKAT . MiRKAT.Q . MiRKAT.R . MiRKAT.iQ . MiRKAT . MiRKATS . MiRKAT_binary . MiRKAT_continuous . bindata . inner.CSKAT . inner.KRV . nordata . poisdata . throat.meta . throat.otu.tab . throat.tree .
Some associated R codes: CSKAT.R . CSKAT_helper.R . CSKAT_support.R . D2K.R . GLMMMiRKAT.R . KRV.R . KRV_helper.R . MMiRKAT.R . MMiRKAT_helper.R . MiRKAT.R . MiRKATS.R . MiRKATS_helper.R . MiRKAT_Binary.R . MiRKAT_Continuous.R . MiRKAT_Q.R . MiRKAT_R.R . MiRKAT_helper.R . MiRKAT_iQ.R . MiRKAT_iQ_helper.R . MiRKAT_support.R . bindata.R . nordata.R . poisdata.R . throat.meta.R . throat.otu.tab.R . throat.tree.R . Full MiRKAT package functions and examples
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