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MiRKAT  

Microbiome Regression-Based Kernel Association Tests
View on CRAN: Click here


Download and install MiRKAT package within the R console
Install from CRAN:
install.packages("MiRKAT")

Install from Github:
library("remotes")
install_github("cran/MiRKAT")

Install by package version:
library("remotes")
install_version("MiRKAT", "1.2.3")



Attach the package and use:
library("MiRKAT")
Maintained by
Anna Plantinga
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-07-25
Latest Update: 2023-02-17
Description:
Test for overall association between microbiome composition data and phenotypes via phylogenetic kernels. The phenotype can be univariate continuous or binary (Zhao et al. (2015) ), survival outcomes (Plantinga et al. (2017) ), multivariate (Zhan et al. (2017) ) and structured phenotypes (Zhan et al. (2017) ). The package can also use robust regression (unpublished work) and integrated quantile regression (Wang et al. (2021) ). In each case, the microbiome community effect is modeled nonparametrically through a kernel function, which can incorporate phylogenetic tree information.
How to cite:
Anna Plantinga (2017). MiRKAT: Microbiome Regression-Based Kernel Association Tests. R package version 1.2.3, https://cran.r-project.org/web/packages/MiRKAT. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0.1 (2018-04-25 21:44), 1.0 (2017-07-25 23:52), 1.1.0 (2020-04-14 10:50), 1.1.1 (2020-08-27 22:10), 1.1.2 (2021-01-22 22:30), 1.1.3 (2021-05-26 15:50), 1.1.4 (2021-06-08 16:00), 1.1.5 (2021-08-23 16:00), 1.2.1 (2021-09-24 18:30), 1.2.2 (2022-11-15 22:00)
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