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MetabolomicsBasics
View on CRAN: Click
here
Download and install MetabolomicsBasics package within the R console
Install from CRAN:
install.packages("MetabolomicsBasics")
Install from Github:
library("remotes")
install_github("cran/MetabolomicsBasics")
Install by package version:
library("remotes")
install_version("MetabolomicsBasics", "1.4.5")
Attach the package and use:
library("MetabolomicsBasics")
Maintained by
Jan Lisec
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-03-23
Latest Update: 2024-01-31
Description:
A set of functions to investigate raw data from (metabol)omics experiments intended to be used on a raw data matrix, i.e. following peak picking and signal deconvolution. Functions can be used to normalize data, detect biomarkers and perform sample classification. A detailed description of best practice usage may be found in the publication .
How to cite:
Jan Lisec (2018). MetabolomicsBasics: Basic Functions to Investigate Metabolomics Data Matrices. R package version 1.4.5, https://cran.r-project.org/web/packages/MetabolomicsBasics. Accessed 21 Nov. 2024.
Previous versions and publish date:
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Complete documentation for MetabolomicsBasics
Functions, R codes and Examples using
the MetabolomicsBasics R package
Some associated functions: AdjustSymbols . CheckForOutliers . ClassificationCV . ClassificationHistogram . ClassificationWrapper . MBoxplot . MetaboliteANOVA . PlotMetabolitePCA . PlotPValueHist . RemoveFactorsByANOVA . ReplaceMissingValues . RestrictedPCA . find_boundaries . met . msconvert . raw . sam . spectra_format_converter . sumformula_from_CAS . unique_labels . unique_subformula_masses .
Some associated R codes: AdjustSymbols.R . CheckForOutliers.R . ClassificationCV.R . ClassificationHistogram.R . ClassificationWrapper.R . DeconvoluteSpectrum.R . FindMaxInt.R . Load_mzML.R . MBoxplot.R . MetaboliteANOVA.R . MetabolomicsBasics-data.R . PlotMetabolitePCA.R . PlotPValueHist.R . RemoveFactorsByANOVA.R . ReplaceMissingValues.R . RestrictedPCA.R . find_boundaries.R . msconvert.R . spectra_format_converter.R . sumformula_from_CAS.R . unique_labels.R . unique_subformula_masses.R . Full MetabolomicsBasics package functions and examples
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