Other packages > Find by keyword >

MetaSubtract  

Subtracting Summary Statistics of One or more Cohorts from Meta-GWAS Results
View on CRAN: Click here


Download and install MetaSubtract package within the R console
Install from CRAN:
install.packages("MetaSubtract")

Install from Github:
library("remotes")
install_github("cran/MetaSubtract")

Install by package version:
library("remotes")
install_version("MetaSubtract", "1.60")



Attach the package and use:
library("MetaSubtract")
Maintained by
Ilja M. Nolte
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-07-11
Latest Update: 2020-03-30
Description:
If results from a meta-GWAS are used for validation in one of the cohorts that was included in the meta-analysis, this will yield biased (i.e. too optimistic) results. The validation cohort needs to be independent from the meta-Genome-Wide-Association-Study (meta-GWAS) results. 'MetaSubtract' will subtract the results of the respective cohort from the meta-GWAS results analytically without having to redo the meta-GWAS analysis using the leave-one-out methodology. It can handle different meta-analyses methods and takes into account if single or double genomic control correction was applied to the original meta-analysis. It can also handle different meta-analysis methods. It can be used for whole GWAS, but also for a limited set of genetic markers. See for application: Nolte I.M. et al. (2017); .
How to cite:
Ilja M. Nolte (2017). MetaSubtract: Subtracting Summary Statistics of One or more Cohorts from Meta-GWAS Results. R package version 1.60, https://cran.r-project.org/web/packages/MetaSubtract. Accessed 05 Oct. 2026.
Previous versions and publish date:
1.0 (2017-07-11 19:37), 1.1 (2017-09-11 14:59), 1.2 (2017-10-13 23:20), 1.3 (2017-12-05 14:44), 1.41 (2018-06-20 15:43), 1.42 (2018-07-02 12:50), 1.43 (2018-07-10 13:10), 1.50 (2019-06-11 10:30), (2026-07-09 08:10)
Other packages that cited MetaSubtract R package
View MetaSubtract citation profile
Other R packages that MetaSubtract depends, imports, suggests or enhances
Complete documentation for MetaSubtract
Functions, R codes and Examples using the MetaSubtract R package
Some associated functions: MetaSubtract-package . alternative_headers . meta.subtract . 
Some associated R codes: Full MetaSubtract package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

correlation  
Methods for Correlation Analysis
Lightweight package for computing different kinds of correlations, such as partial correlations, Ba ...
Download / Learn more Package Citations See dependency  
genie  
Fast, Robust, and Outlier Resistant Hierarchical Clustering
Includes the reference implementation of Genie - a hierarchical clustering algorithm that links two ...
Download / Learn more Package Citations See dependency  
cdlTools  
Tools to Download and Work with USDA Cropscape Data
Downloads USDA National Agricultural Statistics Service (NASS) cropscape data for a specified state ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

28,905

R Packages

247,686

Dependencies

76,495

Author Associations

28,906

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA