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MetaIntegrator  

Meta-Analysis of Gene Expression Data
View on CRAN: Click here


Download and install MetaIntegrator package within the R console
Install from CRAN:
install.packages("MetaIntegrator")

Install from Github:
library("remotes")
install_github("cran/MetaIntegrator")

Install by package version:
library("remotes")
install_version("MetaIntegrator", "2.1.3")



Attach the package and use:
library("MetaIntegrator")
Maintained by
Aditya M. Rao
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-08-05
Latest Update: 2020-02-26
Description:
A pipeline for the meta-analysis of gene expression data. We have assembled several analysis and plot functions to perform integrated multi-cohort analysis of gene expression data (meta- analysis). Methodology described in: .
How to cite:
Aditya M. Rao (2016). MetaIntegrator: Meta-Analysis of Gene Expression Data. R package version 2.1.3, https://cran.r-project.org/web/packages/MetaIntegrator
Previous versions and publish date:
1.0.0 (2016-08-05 11:53), 1.0.1 (2016-08-30 07:59), 1.0.3 (2016-09-29 08:02), 2.0.0 (2018-10-05 17:32), 2.1.0 (2019-07-23 08:20), 2.1.1 (2019-07-23 16:52)
Other packages that cited MetaIntegrator R package
View MetaIntegrator citation profile
Other R packages that MetaIntegrator depends, imports, suggests or enhances
Functions, R codes and Examples using the MetaIntegrator R package
Some associated functions: backwardSearch . calcMetaPower . calculateROC . calculateScore . checkDataObject . classFunction . cleanUpPheno . coconutMetaIntegrator . ens_ensgID_table . ens_entrez_table . filterGenes . forestPlot . forwardSearch . geneSymbolCorrection . getGEOData . getMostRecentFilter . getSampleLevelGeneData . ggForestPlot . heatmapPlot . immunoStatesDecov . immunoStatesGenePropCorr . immunoStatesMatrix . immunoStatesMeta . imputeSex . lincsBaitCorr . lincsCorrelate . lincsTools . manhattanPlot . metaIntegrator_public-package . multiplePRCPlot . multipleROCPlot . pooledROCPlot . prcPlot . predvalPlot . regressionPlot . rocPlot . runMetaAnalysis . subsetOriginalData . summarizeFilterResults . summaryROCCalc . summaryROCPlot . tinyMetaObject . ucsc_genbank_table . ucsc_refseq_table . violinPlot . 
Some associated R codes: ROC_and_search_functions.R . calculatePower.R . calculateScore.R . checkDataObject.R . checkDataObject_functions.R . classFunction.R . cleanUpPheno.R . coconutMetaIntegrator.R . filterGenes.R . forestPlot.R . geneSymbolCorrection.R . getGEOData.R . getMostRecentFilter.R . getSampleLevelGeneData.R . ggForestPlot.R . heatmapPlot.R . immunoStates.R . immunoStatesMeta.R . imputeSex.R . lincsTools.R . manhattanPlot.R . metaAnalysis.R . metaAnalysisFoundation.R . multiplePRCPlot.R . multipleROCPlot.R . pooledROCplot.R . prcPlot.R . predvalPlot.R . regressionPlot.R . runMetaAnalysis.R . subsetOriginalData.R . summarizeFilterResults.R . summaryROCPlot.R . violinPlot.R .  Full MetaIntegrator package functions and examples
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