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MetaComp  

EDGE Taxonomy Assignments Visualization
View on CRAN: Click here


Download and install MetaComp package within the R console
Install from CRAN:
install.packages("MetaComp")

Install from Github:
library("remotes")
install_github("cran/MetaComp")

Install by package version:
library("remotes")
install_version("MetaComp", "1.1.2")



Attach the package and use:
library("MetaComp")
Maintained by
Pavel Senin
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-03-02
Latest Update: 2018-06-18
Description:
Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, MetaPhlAn, DIAMOND, and Pangia. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.
How to cite:
Pavel Senin (2017). MetaComp: EDGE Taxonomy Assignments Visualization. R package version 1.1.2, https://cran.r-project.org/web/packages/MetaComp. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0.1 (2017-03-02 18:54), 1.1.1 (2018-02-19 20:51)
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