Other packages > Find by keyword >

MatrixEQTL  

Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations
View on CRAN: Click here


Download and install MatrixEQTL package within the R console
Install from CRAN:
install.packages("MatrixEQTL")

Install from Github:
library("remotes")
install_github("cran/MatrixEQTL")

Install by package version:
library("remotes")
install_version("MatrixEQTL", "2.3")



Attach the package and use:
library("MatrixEQTL")
Maintained by
Andrey A Shabalin
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2011-06-29
Latest Update: 2019-12-22
Description:
Matrix eQTL is designed for fast eQTL analysis on large datasets. Matrix eQTL can test for association between genotype and gene expression using linear regression with either additive or ANOVA genotype effects. The models can include covariates to account for factors as population stratification, gender, and clinical variables. It also supports models with heteroscedastic and/or correlated errors, false discovery rate estimation and separate treatment of local (cis) and distant (trans) eQTLs. For more details see Shabalin (2012) .
How to cite:
Andrey A Shabalin (2011). MatrixEQTL: Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations. R package version 2.3, https://cran.r-project.org/web/packages/MatrixEQTL. Accessed 26 Aug. 2026.
Previous versions and publish date:
1.0.5 (2011-06-29 11:41), 1.0.6 (2011-08-15 11:07), 1.2.0 (2011-10-07 07:46), 1.5.0 (2012-02-06 10:37), 1.5.1 (2012-02-13 13:05), 1.5.2 (2012-02-15 09:29), 1.6.0 (2012-05-17 08:20), 1.6.1 (2012-05-25 08:19), 1.6.2 (2012-08-21 18:00), 2.0.0 (2013-09-03 11:38), 2.1.0 (2014-02-25 09:31), 2.1.1 (2015-02-03 06:53), 2.2 (2018-01-13 18:07), (2026-07-09 08:10)
Other packages that cited MatrixEQTL R package
View MatrixEQTL citation profile
Other R packages that MatrixEQTL depends, imports, suggests or enhances
Complete documentation for MatrixEQTL
Functions, R codes and Examples using the MatrixEQTL R package
Some associated functions: Covariates . GE . MatrixEQTL-package . MatrixEQTL_cis_code . Matrix_eQTL_main . SNP . SlicedData-class . geneloc . modelANOVA . modelLINEAR . modelLINEAR_CROSS . plot.MatrixEQTL . snpsloc . 
Some associated R codes: Matrix_eQTL_engine.R .  Full MatrixEQTL package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

SelvarMix  
Regularization for Variable Selection in Model-Based Clustering and Discriminant Analysis
Performs a regularization approach to variable selection in themodel-based clustering and classifica ...
Download / Learn more Package Citations See dependency  
PCADSC  
Tools for Principal Component Analysis-Based Data Structure Comparisons
A suite of non-parametric, visual tools for assessing differences in data structures for two datase ...
Download / Learn more Package Citations See dependency  
clinUtils  
General Utility Functions for Analysis of Clinical Data
Utility functions to facilitate the import, the reporting and analysis of clinical data. Example ...
Download / Learn more Package Citations See dependency  
ncodeR  
Techniques for Automated Classifiers
A set of techniques that can be used to develop, validate, and implement automated classifiers. A po ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
RCytoGPS  
Using Cytogenetics Data in R
Defines classes and methods to process text-based cytogenetics using the CytoGPS web site, then imp ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA