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MatrixEQTL  

Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations
View on CRAN: Click here


Download and install MatrixEQTL package within the R console
Install from CRAN:
install.packages("MatrixEQTL")

Install from Github:
library("remotes")
install_github("cran/MatrixEQTL")

Install by package version:
library("remotes")
install_version("MatrixEQTL", "2.3")



Attach the package and use:
library("MatrixEQTL")
Maintained by
Andrey A Shabalin
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2011-06-29
Latest Update: 2019-12-22
Description:
Matrix eQTL is designed for fast eQTL analysis on large datasets. Matrix eQTL can test for association between genotype and gene expression using linear regression with either additive or ANOVA genotype effects. The models can include covariates to account for factors as population stratification, gender, and clinical variables. It also supports models with heteroscedastic and/or correlated errors, false discovery rate estimation and separate treatment of local (cis) and distant (trans) eQTLs. For more details see Shabalin (2012) .
How to cite:
Andrey A Shabalin (2011). MatrixEQTL: Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations. R package version 2.3, https://cran.r-project.org/web/packages/MatrixEQTL. Accessed 06 Aug. 2026.
Previous versions and publish date:
1.0.5 (2011-06-29 11:41), 1.0.6 (2011-08-15 11:07), 1.2.0 (2011-10-07 07:46), 1.5.0 (2012-02-06 10:37), 1.5.1 (2012-02-13 13:05), 1.5.2 (2012-02-15 09:29), 1.6.0 (2012-05-17 08:20), 1.6.1 (2012-05-25 08:19), 1.6.2 (2012-08-21 18:00), 2.0.0 (2013-09-03 11:38), 2.1.0 (2014-02-25 09:31), 2.1.1 (2015-02-03 06:53), 2.2 (2018-01-13 18:07), (2026-07-09 08:10)
Other packages that cited MatrixEQTL R package
View MatrixEQTL citation profile
Other R packages that MatrixEQTL depends, imports, suggests or enhances
Complete documentation for MatrixEQTL
Functions, R codes and Examples using the MatrixEQTL R package
Some associated functions: Covariates . GE . MatrixEQTL-package . MatrixEQTL_cis_code . Matrix_eQTL_main . SNP . SlicedData-class . geneloc . modelANOVA . modelLINEAR . modelLINEAR_CROSS . plot.MatrixEQTL . snpsloc . 
Some associated R codes: Matrix_eQTL_engine.R .  Full MatrixEQTL package functions and examples
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