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MasterBayes
View on CRAN: Click
here
Download and install MasterBayes package within the R console
Install from CRAN:
install.packages("MasterBayes")
Install from Github:
library("remotes")
install_github("cran/MasterBayes")
Install by package version:
library("remotes")
install_version("MasterBayes", "2.58")
Attach the package and use:
library("MasterBayes")
Maintained by
Jarrod Hadfield
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
First Published: 2006-10-01
Latest Update: 2023-02-25
Description:
The primary aim of MasterBayes is to use MCMC techniques to integrate over uncertainty in pedigree configurations estimated from molecular markers and phenotypic data. Emphasis is put on the marginal distribution of parameters that relate the phenotypic data to the pedigree. All simulation is done in compiled C for efficiency.
How to cite:
Jarrod Hadfield (2006). MasterBayes: ML and MCMC Methods for Pedigree Reconstruction and Analysis. R package version 2.58, https://cran.r-project.org/web/packages/MasterBayes. Accessed 11 Apr. 2025.
Previous versions and publish date:
1.0 (2006-10-01 23:59), 1.01 (2006-10-18 16:53), 2.0 (2006-12-15 18:57), 2.1 (2007-11-26 20:49), 2.2 (2008-04-07 19:48), 2.3 (2008-06-16 14:01), 2.4 (2008-09-05 17:30), 2.21 (2008-04-14 08:43), 2.22 (2008-06-13 10:37), 2.41 (2008-12-04 09:19), 2.42 (2009-03-06 18:44), 2.43 (2009-04-14 19:26), 2.44 (2009-07-21 17:47), 2.45 (2009-11-12 12:33), 2.46 (2010-12-18 10:20), 2.47 (2012-01-15 15:23), 2.48 (2012-03-15 12:04), 2.49 (2012-07-06 11:46), 2.50.1 (2013-05-21 08:56), 2.50.2 (2013-11-15 12:33), 2.50 (2012-07-15 19:12), 2.51 (2014-03-20 10:29), 2.52 (2014-12-04 00:43), 2.53.1 (2016-09-07 15:26), 2.54 (2016-10-26 14:27), 2.55 (2017-07-29 19:38), 2.57 (2020-06-25 00:50), 2.58 (2022-06-22 15:00)
Other packages that cited MasterBayes R package
View MasterBayes citation profile
Other R packages that MasterBayes depends,
imports, suggests or enhances
Functions, R codes and Examples using
the MasterBayes R package
Some associated functions: GdataPed . MCMCped . MLE.beta . MLE.ped . MLE.popsize . MasterBayes . PdataPed . WarblerG . WarblerP . autocorrP . beta.loglik . consenusG . extractA . fillX.G . genotype.list . genotypeD . getXlist . insertPed . legalG . mismatches . modeG . modeP . orderPed . popsize.loglik . post.pairs . priorPed . reordXlist . simgenotypes . simpedigree . startPed . summary.genotypeD . tunePed . varPed .
Some associated R codes: ErrorCheck.R . GtoC.R . MCMCped.R . MLE.beta.R . MLE.ped.R . MLE.popsize.R . PedClasses.R . autocorrP.R . beta.loglik.R . consensusG.R . extractA.R . fillX.G.R . genotype.list.R . genotypeD.R . getPost.R . getXlist.R . getsPandtP.R . insertPed.R . legalG.R . mismatches.R . modeG.R . modeP.R . orderPed.R . popsize.loglik.R . post.pairs.R . reordXlist.R . simgenotypes.R . simpedigree.R . varPed.R . Full MasterBayes package functions and examples
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