Other packages > Find by keyword >

MantaID  

A Machine-Learning Based Tool to Automate the Identification of Biological Database IDs
View on CRAN: Click here


Download and install MantaID package within the R console
Install from CRAN:
install.packages("MantaID")

Install from Github:
library("remotes")
install_github("cran/MantaID")

Install by package version:
library("remotes")
install_version("MantaID", "1.0.4")



Attach the package and use:
library("MantaID")
Maintained by
Zhengpeng Zeng
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2022-10-17
Latest Update: 2024-09-09
Description:
The number of biological databases is growing rapidly, but different databases use different IDs to refer to the same biological entity. The inconsistency in IDs impedes the integration of various types of biological data. To resolve the problem, we developed 'MantaID', a data-driven, machine-learning based approach that automates identifying IDs on a large scale. The 'MantaID' model's prediction accuracy was proven to be 99%, and it correctly and effectively predicted 100,000 ID entries within two minutes. 'MantaID' supports the discovery and exploitation of ID patterns from large quantities of databases. (e.g., up to 542 biological databases). An easy-to-use freely available open-source software R package, a user-friendly web application, and APIs were also developed for 'MantaID' to improve applicability. To our knowledge, 'MantaID' is the first tool that enables an automatic, quick, accurate, and comprehensive identification of large quantities of IDs, and can therefore be used as a starting point to facilitate the complex assimilation and aggregation of biological data across diverse databases.
How to cite:
Zhengpeng Zeng (2022). MantaID: A Machine-Learning Based Tool to Automate the Identification of Biological Database IDs. R package version 1.0.4, https://cran.r-project.org/web/packages/MantaID. Accessed 15 Jul. 2026.
Previous versions and publish date:
1.0.1 (2022-10-17 14:45), 1.0.2 (2022-10-18 09:45), 1.0.3 (2024-08-27 10:40), (2026-07-09 08:10)
Other packages that cited MantaID R package
View MantaID citation profile
Other R packages that MantaID depends, imports, suggests or enhances
Complete documentation for MantaID
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

binhf  
Haar-Fisz Functions for Binomial Data
Binomial Haar-Fisz transforms for Gaussianization as in Nunes and Nason (2009). ...
Download / Learn more Package Citations See dependency  
SECFISH  
Disaggregate Variable Costs
These functions were developed within SECFISH project (Strengthening regional cooperation in the are ...
Download / Learn more Package Citations See dependency  
gscaLCA  
Generalized Structure Component Analysis- Latent Class Analysis & Latent Class Regression
Execute Latent Class Analysis (LCA) and Latent Class Regression (LCR) by using Generalized Structu ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
PermAlgo  
Permutational Algorithm to Simulate Survival Data
This version of the permutational algorithm generates a dataset in which event and censoring times ...
Download / Learn more Package Citations See dependency  
pulseTD  
Identification of Transcriptional Dynamics using Pulse Models via 4su-Seq Data and RNA-Seq Data
A tool for analyzing the transcription, processing and degradation rates of genes by 4sU-seq (the Me ...
Download / Learn more Package Citations See dependency  

27,806

R Packages

239,283

Dependencies

73,837

Author Associations

27,807

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA