Other packages > Find by keyword >

MPGE  

A Two-Step Approach to Testing Overall Effect of Gene-Environment Interaction for Multiple Phenotypes
View on CRAN: Click here


Download and install MPGE package within the R console
Install from CRAN:
install.packages("MPGE")

Install from Github:
library("remotes")
install_github("cran/MPGE")

Install by package version:
library("remotes")
install_version("MPGE", "1.0.1")



Attach the package and use:
library("MPGE")
Maintained by
Arunabha Majumdar
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-10-23
Latest Update: 2020-10-23
Description:
Interaction between a genetic variant (e.g., a single nucleotide polymorphism) and an environmental variable (e.g., physical activity) can have a shared effect on multiple phenotypes (e.g., blood lipids). We implement a two-step method to test for an overall interaction effect on multiple phenotypes. In first step, the method tests for an overall marginal genetic association between the genetic variant and the multivariate phenotype. The genetic variants which show an evidence of marginal overall genetic effect in the first step are prioritized while testing for an overall gene-environment interaction effect in the second step. Methodology is available from: A Majumdar, KS Burch, S Sankararaman, B Pasaniuc, WJ Gauderman, JS Witte (2020) .
How to cite:
Arunabha Majumdar (2020). MPGE: A Two-Step Approach to Testing Overall Effect of Gene-Environment Interaction for Multiple Phenotypes. R package version 1.0.1, https://cran.r-project.org/web/packages/MPGE. Accessed 27 Oct. 2026.
Previous versions and publish date:
1.0.0 (2020-10-23 17:40), (2026-07-09 08:09)
Other packages that cited MPGE R package
View MPGE citation profile
Other R packages that MPGE depends, imports, suggests or enhances
Complete documentation for MPGE
Functions, R codes and Examples using the MPGE R package
Some associated functions: MPGE . SST . WHT . environment_data . genotype_data . mv_G_GE . mv_G_GxE_pvalues . phenotype_data . 
Some associated R codes: MPGE.R . check.R . data.R . mv_G_GE_P.R . mv_G_GE_P_base.R . sst.R . whmt.R .  Full MPGE package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

spanish  
Translate Quantities from Strings to Integer and Back. Misc Functions on Spanish Data
Character vector to numerical translation in Euros from Spanish spelled monetary quantities. Reverse ...
Download / Learn more Package Citations See dependency  
SGB  
Simplicial Generalized Beta Regression
Main properties and regression procedures using a generalization of the Dirichlet distribution calle ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
usemodels  
Boilerplate Code for 'Tidymodels' Analyses
Code snippets to fit models using the tidymodels framework can be easily created for a given data se ...
Download / Learn more Package Citations See dependency  
exams2learnr  
Interface for 'exams' Exercises in 'learnr' Tutorials
Automatic generation of quizzes or individual questions for 'learnr' tutorials based on 'R/exams' ex ...
Download / Learn more Package Citations See dependency  

29,218

R Packages

247,686

Dependencies

77,281

Author Associations

29,219

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA