Other packages > Find by keyword >

MOSS  

Multi-Omic Integration via Sparse Singular Value Decomposition
View on CRAN: Click here


Download and install MOSS package within the R console
Install from CRAN:
install.packages("MOSS")

Install from Github:
library("remotes")
install_github("cran/MOSS")

Install by package version:
library("remotes")
install_version("MOSS", "0.2.2")



Attach the package and use:
library("MOSS")
Maintained by
Agustin Gonzalez-Reymundez
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-01-19
Latest Update:
Description:
High dimensionality, noise and heterogeneity among samples and features challenge the omic integration task. Here we present an omic integration method based on sparse singular value decomposition (SVD) to deal with these limitations, by: a. obtaining the main axes of variation of the combined omics, b. imposing sparsity constraints at both subjects (rows) and features (columns) levels using Elastic Net type of shrinkage, and c. allowing both linear and non-linear projections (via t-Stochastic Neighbor Embedding) of the omic data to detect clusters in very convoluted data (Gonzalez-Reymundez et. al, 2022) .
How to cite:
Agustin Gonzalez-Reymundez (2021). MOSS: Multi-Omic Integration via Sparse Singular Value Decomposition. R package version 0.2.2, https://cran.r-project.org/web/packages/MOSS. Accessed 10 Oct. 2026.
Previous versions and publish date:
0.1.0 (2021-01-19 10:20), 0.2.0 (2021-07-16 17:10), 0.2.2 (2022-03-25 16:50), (2026-07-09 08:09)
Other packages that cited MOSS R package
View MOSS citation profile
Other R packages that MOSS depends, imports, suggests or enhances
Complete documentation for MOSS
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

RPEnsemble  
Random Projection Ensemble Classification
Implements the methodology of "Cannings, T. I. and Samworth, R. J. (2017) Random-projection ensemble ...
Download / Learn more Package Citations See dependency  
adespatial  
Multivariate Multiscale Spatial Analysis
Tools for the multiscale spatial analysis of multivariate data. Several methods are based on the us ...
Download / Learn more Package Citations See dependency  
eoR  
Data Management Package (Exposure and Occurrence Data in R)
This data management package provides some helper classes for publicly available data sources (HMD, ...
Download / Learn more Package Citations See dependency  
keyATM  
Keyword Assisted Topic Models
Fits keyword assisted topic models (keyATM) using collapsed Gibbs samplers. The keyATM combines the ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  

28,989

R Packages

247,686

Dependencies

76,729

Author Associations

28,990

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA