Other packages > Find by keyword >

MM2S  

Single-Sample Classifier of Medulloblastoma Subtypes for Medulloblastoma Patient Samples, Mouse Models, and Cell Lines
View on CRAN: Click here


Download and install MM2S package within the R console
Install from CRAN:
install.packages("MM2S")

Install from Github:
library("remotes")
install_github("cran/MM2S")

Install by package version:
library("remotes")
install_version("MM2S", "1.0.6")



Attach the package and use:
library("MM2S")
Maintained by
Benjamin Haibe-Kains
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-06-11
Latest Update: 2019-03-22
Description:
A single-sample classifier that generates Medulloblastoma (MB) subtype predictions for single-samples of human Medulloblastoma (MB) patients and model systems, including cell lines and mouse-models. The MM2S algorithm uses a systems-based methodology that facilitates application of the algorithm on samples irrespective of their platform or source of origin. MM2S demonstrates > 96% accuracy for patients of well-characterized normal cerebellum, Wingless (WNT), or Sonic hedgehog (SHH) subtypes, and the less-characterized Group4 (86%) and Group3 (78.2%). MM2S also enables classification of MB cell lines and mouse models into their human counterparts.This package contains function for implementing the classifier onto human data and mouse data, as well as graphical rendering of the results as PCA (Principal Component Analysis) plots and heatmaps. Deena Gendoo and Benjamin Haibe-Kains (2016) .
How to cite:
Benjamin Haibe-Kains (2015). MM2S: Single-Sample Classifier of Medulloblastoma Subtypes for Medulloblastoma Patient Samples, Mouse Models, and Cell Lines. R package version 1.0.6, https://cran.r-project.org/web/packages/MM2S. Accessed 22 Apr. 2025.
Previous versions and publish date:
1.0.0 (2015-06-11 21:46), 1.0.1 (2015-06-17 17:57), 1.0.2 (2015-07-08 13:49), 1.0.3 (2015-08-12 06:42), 1.0.4 (2015-11-03 01:14), 1.0.5 (2016-02-25 00:39), 1.0.6 (2019-03-22 10:53)
Other packages that cited MM2S R package
View MM2S citation profile
Other R packages that MM2S depends, imports, suggests or enhances
Downloads during the last 30 days
03/2703/2803/2904/0304/0704/0804/1104/1204/1404/1704/20Downloads for MM2S02468101214161820TrendBars

Today's Hot Picks in Authors and Packages

ino  
Initialization of Numerical Optimization
Analysis of the initialization for numerical optimization of real-valued functions, including likel ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
phylosamp  
Sample Size Calculations for Molecular and Phylogenetic Studies
Implements novel tools for estimating sample sizes needed for phylogenetic studies, including studi ...
Download / Learn more Package Citations See dependency  
Qest  
Quantile-Based Estimator
Quantile-based estimators (Q-estimators) can be used to fit any parametric distribution, using its q ...
Download / Learn more Package Citations See dependency  
optimStrat  
Choosing the Sample Strategy
Intended to assist in the choice of the sampling strategy to implement in a survey. ...
Download / Learn more Package Citations See dependency  
GWPR.light  
Geographically Weighted Panel Regression
Geographically weighted panel regression is grounded in a branch of spatial statistics. Using geogra ...
Download / Learn more Package Citations See dependency  

24,098

R Packages

207,311

Dependencies

65,069

Author Associations

24,099

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA