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MLML2R  

Maximum Likelihood Estimation of DNA Methylation and Hydroxymethylation Proportions
View on CRAN: Click here


Download and install MLML2R package within the R console
Install from CRAN:
install.packages("MLML2R")

Install from Github:
library("remotes")
install_github("cran/MLML2R")

Install by package version:
library("remotes")
install_version("MLML2R", "0.3.3")



Attach the package and use:
library("MLML2R")
Maintained by
Samara Kiihl
[Scholar Profile | Author Map]
First Published: 2018-02-13
Latest Update: 2019-10-17
Description:
Maximum likelihood estimates (MLE) of the proportions of 5-mC and 5-hmC in the DNA using information from BS-conversion, TAB-conversion, and oxBS-conversion methods. One can use information from all three methods or any combination of two of them. Estimates are based on Binomial model by Qu et al. (2013) and Kiihl et al. (2019) .
How to cite:
Samara Kiihl (2018). MLML2R: Maximum Likelihood Estimation of DNA Methylation and Hydroxymethylation Proportions. R package version 0.3.3, https://cran.r-project.org/web/packages/MLML2R. Accessed 29 Mar. 2025.
Previous versions and publish date:
0.1.0 (2018-02-13 10:40), 0.2.0 (2018-02-21 14:09), 0.2.1 (2018-05-17 05:13), 0.3.0 (2018-09-30 06:10), 0.3.1 (2018-11-12 11:30), 0.3.2 (2019-04-06 16:22)
Other packages that cited MLML2R R package
View MLML2R citation profile
Other R packages that MLML2R depends, imports, suggests or enhances
Complete documentation for MLML2R
Functions, R codes and Examples using the MLML2R R package
Some associated functions: C_BS_sim . C_OxBS_sim . C_TAB_sim . MLML . T_BS_sim . T_OxBS_sim . T_TAB_sim . 
Some associated R codes: MLML.R . data.R .  Full MLML2R package functions and examples
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