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ML.MSBD  

Maximum Likelihood Inference on Multi-State Trees
View on CRAN: Click here


Download and install ML.MSBD package within the R console
Install from CRAN:
install.packages("ML.MSBD")

Install from Github:
library("remotes")
install_github("cran/ML.MSBD")

Install by package version:
library("remotes")
install_version("ML.MSBD", "1.2.1")



Attach the package and use:
library("ML.MSBD")
Maintained by
Joelle Barido-Sottani
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-11-14
Latest Update: 2021-04-16
Description:
Inference of a multi-states birth-death model from a phylogeny, comprising a number of states N, birth and death rates for each state and on which edges each state appears. Inference is done using a hybrid approach: states are progressively added in a greedy approach. For a fixed number of states N the best model is selected via maximum likelihood. Reference: J. Barido-Sottani, T. G. Vaughan and T. Stadler (2018) .
How to cite:
Joelle Barido-Sottani (2017). ML.MSBD: Maximum Likelihood Inference on Multi-State Trees. R package version 1.2.1, https://cran.r-project.org/web/packages/ML.MSBD
Previous versions and publish date:
1.0.0 (2017-11-14 17:54), 1.1.0 (2018-07-09 11:30), 1.1.1 (2019-03-07 16:42), 1.2.0 (2019-09-26 21:40)
Other packages that cited ML.MSBD R package
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Other R packages that ML.MSBD depends, imports, suggests or enhances
Functions, R codes and Examples using the ML.MSBD R package
Some associated functions: ML.MSBD-package . ML_MSBD . likelihood_MSBD . likelihood_MSBD_unresolved . 
Some associated R codes: ML_MSBD.R . likelihood_MSBD.R . likelihood_MSBD_unresolved.R . likelihood_aux.R . params_conversion.R . tree_auxiliary.R .  Full ML.MSBD package functions and examples
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