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MKomics
View on CRAN: Click
here
Download and install MKomics package within the R console
Install from CRAN:
install.packages("MKomics")
Install from Github:
library("remotes")
install_github("cran/MKomics")
Install by package version:
library("remotes")
install_version("MKomics", "0.7")
Attach the package and use:
library("MKomics")
Maintained by
Matthias Kohl
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-02-19
Latest Update: 2021-08-08
Description:
Similarity plots based on correlation and median absolute deviation (MAD); adjusting colors for heatmaps; aggregate technical replicates; calculate pairwise fold-changes and log fold-changes; compute one- and two-way ANOVA; simplified interface to package 'limma' (Ritchie et al. (2015), ) for moderated t-test and one-way ANOVA; Hamming and Levenshtein (edit) distance of strings as well as optimal alignment scores for global (Needleman-Wunsch) and local (Smith-Waterman) alignments with constant gap penalties (Merkl and Waack (2009), ISBN:978-3-527-32594-8).
How to cite:
Matthias Kohl (2020). MKomics: Omics Data Analysis. R package version 0.7, https://cran.r-project.org/web/packages/MKomics. Accessed 04 Jan. 2025.
Previous versions and publish date:
0.5 (2020-02-19 21:20)
Other packages that cited MKomics R package
View MKomics citation profile
Other R packages that MKomics depends,
imports, suggests or enhances
Complete documentation for MKomics
Functions, R codes and Examples using
the MKomics R package
Some associated functions: 0MKomics-package . corDist . corPlot . heatmapCol . madMatrix . madPlot . mod.oneway.test . mod.t.test . oneWayAnova . pairwise.mod.t.test . pairwiseFC . pairwiselogFC . repMeans . simPlot . stringDist . stringSim . traceBack . twoWayAnova .
Some associated R codes: corDist.R . corPlot.R . corPlot2.R . heatmapCol.R . madMatrix.R . madPlot.R . madPlot2.R . mod.oneway.test.R . mod.t.test.R . oneWayAnova.R . pairwise.mod.t.test.R . pairwiseFC.R . pairwiselogFC.R . repMeans.R . simPlot.R . simPlot2.R . stringDist.R . stringSim.R . traceBack.R . twoWayAnova.R . Full MKomics package functions and examples
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