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MIDASim  

Simulating Realistic Microbiome Data using 'MIDASim'
View on CRAN: Click here


Download and install MIDASim package within the R console
Install from CRAN:
install.packages("MIDASim")

Install from Github:
library("remotes")
install_github("cran/MIDASim")

Install by package version:
library("remotes")
install_version("MIDASim", "2.0")



Attach the package and use:
library("MIDASim")
Maintained by
Mengyu He
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2025-07-05
Latest Update: 2025-07-05
Description:
The 'MIDASim' package is a microbiome data simulator for generating realistic microbiome datasets by adapting a user-provided template. It supports the controlled introduction of experimental signals-such as shifts in taxon relative abundances, prevalence, and sample library sizes-to create distinct synthetic populations under diverse simulation scenarios. For more details, see He et al. (2024) <doi:10.1186/s40168-024-01822-z>.
How to cite:
Mengyu He (2025). MIDASim: Simulating Realistic Microbiome Data using 'MIDASim'. R package version 2.0, https://cran.r-project.org/web/packages/MIDASim. Accessed 10 Mar. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited MIDASim R package
View MIDASim citation profile
Other R packages that MIDASim depends, imports, suggests or enhances
Complete documentation for MIDASim
Functions, R codes and Examples using the MIDASim R package
Full MIDASim package functions and examples
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