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MGDrivE2  

Mosquito Gene Drive Explorer 2
View on CRAN: Click here


Download and install MGDrivE2 package within the R console
Install from CRAN:
install.packages("MGDrivE2")

Install from Github:
library("remotes")
install_github("cran/MGDrivE2")

Install by package version:
library("remotes")
install_version("MGDrivE2", "2.1.0")



Attach the package and use:
library("MGDrivE2")
Maintained by
Agastya Mondal
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-10-24
Latest Update: 2023-03-04
Description:
A simulation modeling framework which significantly extends capabilities from the 'MGDrivE' simulation package via a new mathematical and computational framework based on stochastic Petri nets. For more information about 'MGDrivE', see our publication: S
How to cite:
Agastya Mondal (2020). MGDrivE2: Mosquito Gene Drive Explorer 2. R package version 2.1.0, https://cran.r-project.org/web/packages/MGDrivE2
Previous versions and publish date:
1.0.1 (2020-10-24 11:30), 1.1.0 (2021-01-13 07:00), 2.0.0 (2022-08-20 23:50)
Other packages that cited MGDrivE2 R package
View MGDrivE2 citation profile
Other R packages that MGDrivE2 depends, imports, suggests or enhances
Functions, R codes and Examples using the MGDrivE2 R package
Some associated functions: add_interventions . base_MQ . base_MUH . base_aquatic_geno . base_aquatic_stage . base_erlang . base_erlang_F . base_gen . base_gen_FE . base_sum_F . base_summarize_humans . batch_migration . batch_migration_stage . calc_move_rate . convert_prevalence_to_eir . equilibrium_Imperial_decoupled . equilibrium_Imperial_decoupled_human . equilibrium_SEI_Imperial . equilibrium_SEI_SEIR . equilibrium_SEI_SIS . equilibrium_SEI_decoupled_human . equilibrium_SEI_decoupled_mosy . equilibrium_lifeycle . get_shape . human_Imperial_ODE . imperial_model_param_list_create . make_Q_Imperial . make_Q_SEI . movement_prob2rate . mu_ts . sim_trajectory_CSV . sim_trajectory_CSV_decoupled . sim_trajectory_R . sim_trajectory_R_decoupled . sim_trajectory_base_CSV . sim_trajectory_base_CSV_decoupled . sim_trajectory_base_R . sim_trajectory_base_R_decoupled_Imperial . sim_trajectory_base_R_decoupled_SIS . solve_muAqua . split_aggregate_CSV . split_aggregate_CSV_decoupled . spn_P_epiSEIR_network . spn_P_epiSEIR_node . spn_P_epiSIS_network . spn_P_epiSIS_node . spn_P_epi_decoupled_node . spn_P_lifecycle_network . spn_P_lifecycle_node . spn_Post . spn_Pre . spn_S . spn_T_epiSEIR_network . spn_T_epiSEIR_node . spn_T_epiSIS_network . spn_T_epiSIS_node . spn_T_epi_decoupled_node . spn_T_lifecycle_network . spn_T_lifecycle_node . spn_hazards . spn_hazards_decoupled . step_CLE . step_DM . step_ODE . step_ODE_decoupled . step_PTS . step_PTS_decoupled . summarize_eggs_geno . summarize_eggs_stage . summarize_females . summarize_females_epi . summarize_humans_epiImperial . summarize_humans_epiSEIR . summarize_humans_epiSIS . summarize_larvae_geno . summarize_larvae_stage . summarize_males . summarize_pupae_geno . summarize_pupae_stage . summarize_stats_CSV . summarize_stats_CSV_decoupled . track_hinf . 
Some associated R codes: Imperial-model-params.R . Imperial-ode.R . PN-auxiliary.R . PN-epi-node-decoupled-P.R . PN-epi-node-decoupled-T.R . PN-epiSEIR-network-P.R . PN-epiSEIR-network-T.R . PN-epiSEIR-node-P.R . PN-epiSEIR-node-T.R . PN-epiSIS-network-P.R . PN-epiSIS-network-T.R . PN-epiSIS-node-P.R . PN-epiSIS-node-T.R . PN-lifecycle-network-P.R . PN-lifecycle-network-T.R . PN-lifecycle-node-P.R . PN-lifecycle-node-T.R . PN-matrix.R . auxiliary-analysis.R . auxiliary-batch.R . auxiliary-internal.R . auxiliary-plot.R . auxiliary-tracking.R . data.R . equilibrium-auxiliary.R . equilibrium-epi-decoupled.R . equilibrium-epiImperial.R . equilibrium-epiSEIR.R . equilibrium-epiSIS.R . equilibrium-lifecycle.R . hazard-auxiliary.R . hazard-functions-human.R . hazard-functions-mosy.R . hazard-main-decoupled.R . hazard-main.R . human-SIS-ode-decoupled.R . interventions.R . sampling-CLE.R . sampling-DM.R . sampling-ODE.R . sampling-PTS-decoupled.R . sampling-PTS.R . sampling-trajectory-CSV.R . sampling-trajectory-R-decoupled.R . sampling-trajectory-R.R . sampling-trajectory-decoupled-CSV.R . zzz.R .  Full MGDrivE2 package functions and examples
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