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MGDrivE  

Mosquito Gene Drive Explorer
View on CRAN: Click here


Download and install MGDrivE package within the R console
Install from CRAN:
install.packages("MGDrivE")

Install from Github:
library("remotes")
install_github("cran/MGDrivE")

Install by package version:
library("remotes")
install_version("MGDrivE", "1.6.0")



Attach the package and use:
library("MGDrivE")
Maintained by
Héctor Manuel Sánchez Castellanos
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-07-12
Latest Update: 2020-10-05
Description:
Provides a model designed to be a reliable testbed where various gene drive interventions for mosquito-borne diseases control. It is being developed to accommodate the use of various mosquito-specific gene drive systems within a population dynamics framework that allows migration of individuals between patches in landscape. Previous work developing the population dynamics can be found in Deredec et al. (2001) and Hancock & Godfray (2007) , and extensions to accommodate CRISPR homing dynamics in Marshall et al. (2017) .
How to cite:
Héctor Manuel Sánchez Castellanos (2019). MGDrivE: Mosquito Gene Drive Explorer. R package version 1.6.0, https://cran.r-project.org/web/packages/MGDrivE. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0.0 (2019-07-12 17:00), 1.1.0 (2019-08-19 23:00), 1.5.0 (2020-01-29 23:10)
Other packages that cited MGDrivE R package
View MGDrivE citation profile
Other R packages that MGDrivE depends, imports, suggests or enhances
Complete documentation for MGDrivE
Functions, R codes and Examples using the MGDrivE R package
Some associated functions: MGDrivE-Cube . MGDrivE-Model . MGDrivE . Network . Patch . aggregateFemales . aggregateOutput . basicBatchMigration . basicRepeatedReleases . calcAquaticStageSurvivalProbability . calcAverageGenerationTime . calcCos . calcDensityDependentDeathRate . calcExpKernel . calcGammaKernel . calcHaversine . calcHurdleExpKernel . calcLarvalDist . calcLarvalPopEquilibrium . calcLarvalStageMortalityRate . calcLognormalKernel . calcOmega . calcPopulationGrowthRate . calcQuantiles . calcVinEll . calcVinSph . calcZeroInflation . cube2csv . cubeClvR . cubeClvR2 . cubeECHACR . cubeECHACRX . cubeHoming1RA . cubeHomingDrive . cubeKillerRescue . cubeMEDEA . cubeMendelian . cubeModifiers . cubeOneLocusTA . cubeRIDL . cubeReciprocalTranslocations . cubeSplitDrive . cubeTGD . cubeTGDX . cubeTwoLocusTA . cubeWolbachia . eraseDirectory . generateReleaseVector . get_alpha_Network . get_beta_Network . get_conF_Network . get_conM_Network . get_drivecubeindex_Network . get_eta_Network . get_femalePop_Patch . get_genotypesID_Network . get_genotypesN_Network . get_malePop_Patch . get_muAd_Network . get_muAq_Network . get_nPatch_Network . get_omega_Network . get_patchReleases_Network . get_phi_Network . get_s_Network . get_tNow_Network . get_tau_Network . get_timeAq_Network . get_xiF_Network . get_xiM_Network . ggColUtility . kernels . moveMatAll2 . moveMatCascade3 . moveMatDiag . moveMatDiagOneCity . moveMatDie . moveMatIndependent3 . moveMatMixedSpil . moveMatTaleOfTwoCities . moveMatTriDiagonal . moveMatTriple . multRun_Network . normalise . oneDay_Migration_Deterministic_Network . oneDay_Migration_Stochastic_Network . oneDay_Network . oneDay_PopDynamics_Patch . oneDay_adultDeath_deterministic_Patch . oneDay_adultDeath_stochastic_Patch . oneDay_eggDM_deterministic_Patch . oneDay_eggDM_stochastic_Patch . oneDay_eggReleases_Patch . oneDay_initOutput_Patch . oneDay_larvaDM_deterministic_Patch . oneDay_larvaDM_stochastic_Patch . oneDay_mating_deterministic_Patch . oneDay_mating_stochastic_Patch . oneDay_migrationIn_Patch . oneDay_oviposit_deterministic_Patch . oneDay_oviposit_stochastic_Patch . oneDay_pupaDM_deterministic_Patch . oneDay_pupaDM_stochastic_Patch . oneDay_pupation_deterministic_Patch . oneDay_pupation_stochastic_Patch . oneDay_releases_Patch . oneDay_writeOutput_Patch . oneRun_Network . parameterizeMGDrivE . plotMGDrivEMult . plotMGDrivESingle . quantileC . rDirichlet . reset_Network . reset_Patch . retrieveOutput . set_NetworkPointer_Patch . set_initialPopulation_Patch . set_population_deterministic_Patch . set_population_stochastic_Patch . setupMGDrivE . splitOutput . 
Some associated R codes: Cube-1LocusTA.R . Cube-2LocusTA.R . Cube-Auxiliary.R . Cube-CRISPR1RA.R . Cube-CRISPR2MF.R . Cube-ClvR.R . Cube-ClvR2.R . Cube-ECHACR.R . Cube-ECHACRX.R . Cube-KillerRescue.R . Cube-MEDEA.R . Cube-RIDL.R . Cube-RecTrans.R . Cube-SMendelian.R . Cube-SplitDrive.R . Cube-Wolbachia.R . Cube-tGD.R . Cube-tGDX.R . MGDrivE-Auxiliary.R . MGDrivE-Graphics.R . MGDrivE-Releases.R . MGDrivE-Setup.R . MGDrivE.R . Network-Class.R . Network-Migration.R . Network-Parameters.R . Network-Simulation.R . Patch-Class.R . Patch-Methods.R . Patch-Migration.R . Patch-Simulation.R . RcppExports.R . data.R . zzz.R .  Full MGDrivE package functions and examples
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