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MDplot
View on CRAN: Click
here
Download and install MDplot package within the R console
Install from CRAN:
install.packages("MDplot")
Install from Github:
library("remotes")
install_github("cran/MDplot")
Install by package version:
library("remotes")
install_version("MDplot", "1.0.1")
Attach the package and use:
library("MDplot")
Maintained by
Christian Margreitter
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
10.32614/CRAN.package.MDplot . https://github.com/MDplot/MDplot . MDplot citation info . MDplot results . MDplot.pdf . MDplot (The R Journal publication) . MDplot_1.0.1.tar.gz . MDplot_1.0.1.zip . MDplot_1.0.1.zip . MDplot_1.0.1.zip . MDplot_1.0.1.tgz . MDplot_1.0.1.tgz . MDplot_1.0.1.tgz . MDplot_1.0.1.tgz . MDplot archive . https://CRAN.R-project.org/package=MDplot .
First Published: 2016-02-11
Latest Update: 2017-07-04
Description:
Provides automatization for plot generation succeeding common molecular dynamics analyses.
This includes straightforward plots, such as RMSD (Root-Mean-Square-Deviation) and
RMSF (Root-Mean-Square-Fluctuation) but also more sophisticated ones such as
dihedral angle maps, hydrogen bonds, cluster bar plots and
DSSP (Definition of Secondary Structure of Proteins) analysis. Currently able to load
GROMOS, GROMACS and AMBER formats, respectively.
How to cite:
Christian Margreitter (2016). MDplot: Visualising Molecular Dynamics Analyses. R package version 1.0.1, https://cran.r-project.org/web/packages/MDplot. Accessed 29 Apr. 2025.
Previous versions and publish date:
Other packages that cited MDplot R package
View MDplot citation profile
Other R packages that MDplot depends,
imports, suggests or enhances
Complete documentation for MDplot
Functions, R codes and Examples using
the MDplot R package
Some associated functions: MDplot-internal . MDplot_argument-class . TIcurve . clusters . clusters_ts . dssp . dssp_ts . hbond . hbond_ts . load_TIcurve . load_clusters . load_clusters_ts . load_dssp . load_dssp_ts . load_hbond . load_hbond_ts . load_noe . load_ramchandran . load_rmsd . load_rmsf . load_timeseries . load_xrmsd . noe . ramachandran . rmsd . rmsd_average . rmsf . timeseries . translate_aminoacids . xrmsd .
Some associated R codes: TIcurve.R . clusters.R . dssp.R . hbond.R . helperclasses.R . helperfunctions.R . noe.R . ramachandran.R . rmsd.R . rmsf.R . timeseries.R . xrmsd.R . Full MDplot package functions and examples
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