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MDplot  

Visualising Molecular Dynamics Analyses
View on CRAN: Click here


Download and install MDplot package within the R console
Install from CRAN:
install.packages("MDplot")

Install from Github:
library("remotes")
install_github("cran/MDplot")

Install by package version:
library("remotes")
install_version("MDplot", "1.0.1")



Attach the package and use:
library("MDplot")
Maintained by
Christian Margreitter
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-02-11
Latest Update: 2017-07-04
Description:
Provides automatization for plot generation succeeding common molecular dynamics analyses. This includes straightforward plots, such as RMSD (Root-Mean-Square-Deviation) and RMSF (Root-Mean-Square-Fluctuation) but also more sophisticated ones such as dihedral angle maps, hydrogen bonds, cluster bar plots and DSSP (Definition of Secondary Structure of Proteins) analysis. Currently able to load GROMOS, GROMACS and AMBER formats, respectively.
How to cite:
Christian Margreitter (2016). MDplot: Visualising Molecular Dynamics Analyses. R package version 1.0.1, https://cran.r-project.org/web/packages/MDplot. Accessed 22 Dec. 2024.
Previous versions and publish date:
0.2 (2016-02-11 14:28), 0.3.1 (2016-04-28 15:55), 0.3 (2016-02-18 15:14), 1.0.0 (2017-02-23 17:30)
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Complete documentation for MDplot
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