Other packages > Find by keyword >

MDaRes  

MD Analysis of Residue Properties Using Structural Alphabets
View on CRAN: Click here


Download and install MDaRes package within the R console
Install from CRAN:
install.packages("MDaRes")

Install from Github:
library("remotes")
install_github("cran/MDaRes")

Install by package version:
library("remotes")
install_version("MDaRes", "0.0.2")



Attach the package and use:
library("MDaRes")
Maintained by
Alessandro Pandini
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2026-08-25
Latest Update: 2026-08-25
Description:
Analyze molecular dynamics (MD) simulation data using structural alphabets. Protein local conformations from molecular simulations are encoded in a compressed string representation. Residue-level UniProt annotations can be directly retrieved. Comparative analysis tools are available to investigate conformational variability, coordinated motions, and differences between systems (e.g. wild-type vs mutant; bound vs unbound). Methodological details for the structural alphabet analysis can be found in Pandini et al. (2013) <doi:10.1093/bioinformatics/btt326>.
How to cite:
Alessandro Pandini (2026). MDaRes: MD Analysis of Residue Properties Using Structural Alphabets. R package version 0.0.2, https://cran.r-project.org/web/packages/MDaRes. Accessed 03 Oct. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited MDaRes R package
View MDaRes citation profile
Other R packages that MDaRes depends, imports, suggests or enhances
Complete documentation for MDaRes
Functions, R codes and Examples using the MDaRes R package
Full MDaRes package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

sudokuAlt  
Tools for Making and Spoiling Sudoku Games
Tools for making, retrieving, displaying and solving sudoku games. This package is an alternative to ...
Download / Learn more Package Citations See dependency  
cccrm  
Concordance Correlation Coefficient for Repeated (and Non-Repeated) Measures
Estimates the Concordance Correlation Coefficient to assess agreement. The scenarios considered are ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  
mxmmod  
Measurement Model of Derivatives in 'OpenMx'
Provides a convenient interface in 'OpenMx' for building Estabrook's (2015) ...
Download / Learn more Package Citations See dependency  
WA  
While-Alive Loss Rate for Recurrent Event in the Presence of Death
Contains inferential and graphical routines for multi-group analysis of while-alive loss (or event) ...
Download / Learn more Package Citations See dependency  
Maintainer: Lu Mao (view profile)

28,905

R Packages

247,686

Dependencies

76,495

Author Associations

28,834

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA