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MDSMap
View on CRAN: Click
here
Download and install MDSMap package within the R console
Install from CRAN:
install.packages("MDSMap")
Install from Github:
library("remotes")
install_github("cran/MDSMap") Install by package version:
library("remotes")
install_version("MDSMap", "1.3") Attach the package and use:
library("MDSMap")
Maintained by
Bram Boskamp
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-11-29
Latest Update: 2025-04-28
Description:
Estimate genetic linkage maps for markers on a single chromosome (or in a single linkage group) from pairwise recombination fractions or intermarker distances using weighted metric multidimensional scaling. The methods are suitable for autotetraploid as well as diploid populations. Options for assessing the fit to a known map are also provided. Methods are discussed in detail in Preedy and Hackett (2016) .
How to cite:
Bram Boskamp (2017). MDSMap: High Density Genetic Linkage Mapping using Multidimensional Scaling. R package version 1.3, https://cran.r-project.org/web/packages/MDSMap. Accessed 22 Sep. 2026.
Previous versions and publish date:
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Other R packages that MDSMap depends,
imports, suggests or enhances
Complete documentation for MDSMap
Functions, R codes and Examples using
the MDSMap R package
Some associated functions: MDSMap-package . calc.maps.pc . calc.maps.sphere . calc.nnfit.from.file . calc.nnfit.loci . calc.nnfit . calc.nswaps . calc.pair.rf.lod . convert.polar . dmap.check . dmap . estimate.map . get.dist.loci . get.nearest.informative . invert.map . lgI.txt . lgV.txt . map.to.interval . meandist.from.truth . plot.pcmap . plot.pcmap3d . plot.spheremap . recalc.nnfit.from.map . sim.bc.rflod.file .
Some associated R codes: MDSmap-package.R . data.R . mds.R . Full MDSMap package functions and examples
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