Other packages > Find by keyword >

MCMC.OTU  

Bayesian Analysis of Multivariate Counts Data in DNA Metabarcoding and Ecology
View on CRAN: Click here


Download and install MCMC.OTU package within the R console
Install from CRAN:
install.packages("MCMC.OTU")

Install from Github:
library("remotes")
install_github("cran/MCMC.OTU")

Install by package version:
library("remotes")
install_version("MCMC.OTU", "1.0.10")



Attach the package and use:
library("MCMC.OTU")
Maintained by
Mikhail V. Matz
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2014-05-05
Latest Update: 2016-02-12
Description:
Poisson-lognormal generalized linear mixed model analysis of multivariate counts data using MCMC, aiming to infer the changes in relative proportions of individual variables. The package was originally designed for sequence-based analysis of microbial communities ("metabarcoding", variables = operational taxonomic units, OTUs), but can be used for other types of multivariate counts, such as in ecological applications (variables = species). The results are summarized and plotted using 'ggplot2' functions. Includes functions to remove sample and variable outliers and reformat counts into normalized log-transformed values for correlation and principal component/coordinate analysis. Walkthrough and examples: http://www.bio.utexas.edu/research/matz_lab/matzlab/Methods_files/walkthroughExample_mcmcOTU_R.txt.
How to cite:
Mikhail V. Matz (2014). MCMC.OTU: Bayesian Analysis of Multivariate Counts Data in DNA Metabarcoding and Ecology. R package version 1.0.10, https://cran.r-project.org/web/packages/MCMC.OTU
Previous versions and publish date:
1.0.8 (2014-05-05 07:09)
Other packages that cited MCMC.OTU R package
View MCMC.OTU citation profile
Other R packages that MCMC.OTU depends, imports, suggests or enhances
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

rdbnomics  
Download DBnomics Data
R access to hundreds of millions data series from DBnomics API (). ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
ftaproxim  
Fault Tree Analysis Based on Proxel Simulation
Calculation and plotting of instantaneous unavailabilities of basic events along with the top event ...
Download / Learn more Package Citations See dependency  
critpath  
Setting the Critical Path in Project Management
Solving the problem of project management using CPM (Critical Path Method), PERT (Program Evaluation ...
Download / Learn more Package Citations See dependency  
steepness  
Testing Steepness of Dominance Hierarchies
The steepness package computes steepness as a property of dominance hierarchies. Steepness is define ...
Download / Learn more Package Citations See dependency  
mistral  
Methods in Structural Reliability
Various reliability analysis methods for rare event inference (computing failure probability and qua ...
Download / Learn more Package Citations See dependency  

22,114

R Packages

188,080

Dependencies

55,244

Author Associations

22,115

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net. Contact Us / Suggestions / Concerns