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MAnorm2  

Tools for Normalizing and Comparing ChIP-seq Samples
View on CRAN: Click here


Download and install MAnorm2 package within the R console
Install from CRAN:
install.packages("MAnorm2")

Install from Github:
library("remotes")
install_github("cran/MAnorm2")

Install by package version:
library("remotes")
install_version("MAnorm2", "1.2.2")



Attach the package and use:
library("MAnorm2")
Maintained by
Shiqi Tu
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-09-13
Latest Update: 2022-10-28
Description:
Chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq) is the premier technology for profiling genome-wide localization of chromatin-binding proteins, including transcription factors and histones with various modifications. This package provides a robust method for normalizing ChIP-seq signals across individual samples or groups of samples. It also designs a self-contained system of statistical models for calling differential ChIP-seq signals between two or more biological conditions as well as for calling hypervariable ChIP-seq signals across samples. Refer to Tu et al. (2021) and Chen et al. (2022) for associated statistical details.
How to cite:
Shiqi Tu (2021). MAnorm2: Tools for Normalizing and Comparing ChIP-seq Samples. R package version 1.2.2, https://cran.r-project.org/web/packages/MAnorm2
Previous versions and publish date:
1.2.0 (2021-09-13 12:30), 1.2.1 (2022-08-30 11:30)
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