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MAPITR
View on CRAN: Click
here
Download and install MAPITR package within the R console
Install from CRAN:
install.packages("MAPITR")
Install from Github:
library("remotes")
install_github("cran/MAPITR")
Install by package version:
library("remotes")
install_version("MAPITR", "1.1.2")
Attach the package and use:
library("MAPITR")
Maintained by
Michael Turchin
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2020-09-17
Latest Update: 2020-09-28
Description:
A genetic analysis tool and variance component
model for identifying marginal epistasis between pathways
and the rest of the genome. 'MAPITR' uses as input a matrix
of genotypes, a vector of phenotypes, and a list of
pathways. 'MAPITR' then iteratively tests each pathway for
epistasis between any variants within the pathway versus
any variants remaining in the rest of the genome. 'MAPITR'
returns results in the form of p-values for every pathway
indicating whether the null model of there being no
epistatic interactions between a pathway and the rest of
the genome can be rejected.
How to cite:
Michael Turchin (2020). MAPITR: MArginal ePIstasis Test for Regions. R package version 1.1.2, https://cran.r-project.org/web/packages/MAPITR. Accessed 29 Jan. 2025.
Other packages that cited MAPITR R package
View MAPITR citation profile
Other R packages that MAPITR depends,
imports, suggests or enhances
Complete documentation for MAPITR
Functions, R codes and Examples using
the MAPITR R package
Some associated functions: MAPITR . MAPITR_SimData_Genotypes . MAPITR_SimData_PCs . MAPITR_SimData_Pathways . MAPITR_SimData_Phenotype . MAPITR_TestData_Genotypes . MAPITR_TestData_PCs . MAPITR_TestData_Pathways . MAPITR_TestData_Phenotype .
Some associated R codes: DataPreprocessing.R . MAPITR.R . RcppExports.R . RuntimeVersions.R . data.R . Full MAPITR package functions and examples
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