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MAPITR  

MArginal ePIstasis Test for Regions
View on CRAN: Click here


Download and install MAPITR package within the R console
Install from CRAN:
install.packages("MAPITR")

Install from Github:
library("remotes")
install_github("cran/MAPITR")

Install by package version:
library("remotes")
install_version("MAPITR", "1.1.2")



Attach the package and use:
library("MAPITR")
Maintained by
Michael Turchin
[Scholar Profile | Author Map]
First Published: 2020-09-17
Latest Update: 2020-09-28
Description:
A genetic analysis tool and variance component model for identifying marginal epistasis between pathways and the rest of the genome. 'MAPITR' uses as input a matrix of genotypes, a vector of phenotypes, and a list of pathways. 'MAPITR' then iteratively tests each pathway for epistasis between any variants within the pathway versus any variants remaining in the rest of the genome. 'MAPITR' returns results in the form of p-values for every pathway indicating whether the null model of there being no epistatic interactions between a pathway and the rest of the genome can be rejected.
How to cite:
Michael Turchin (2020). MAPITR: MArginal ePIstasis Test for Regions. R package version 1.1.2, https://cran.r-project.org/web/packages/MAPITR. Accessed 01 May. 2025.
Previous versions and publish date:
1.0.5 (2020-09-17 14:30), 1.1.1 (2020-09-23 08:30)
Other packages that cited MAPITR R package
View MAPITR citation profile
Other R packages that MAPITR depends, imports, suggests or enhances
Complete documentation for MAPITR
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