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MAP  

Multimodal Automated Phenotyping
View on CRAN: Click here


Download and install MAP package within the R console
Install from CRAN:
install.packages("MAP")

Install from Github:
library("remotes")
install_github("cran/MAP")

Install by package version:
library("remotes")
install_version("MAP", "1.0.0")



Attach the package and use:
library("MAP")
Maintained by
Thomas Charlon
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-04-01
Latest Update: 2024-12-02
Description:
Electronic health records (EHR) linked with biorepositories are a powerful platform for translational studies. A major bottleneck exists in the ability to phenotype patients accurately and efficiently. Towards that end, we developed an automated high-throughput phenotyping method integrating International Classification of Diseases (ICD) codes and narrative data extracted using natural language processing (NLP). Specifically, our proposed method, called MAP (Map Automated Phenotyping algorithm), fits an ensemble of latent mixture models on aggregated ICD and NLP counts along with healthcare utilization. The MAP algorithm yields a predicted probability of phenotype for each patient and a threshold for classifying subjects with phenotype yes/no (See Katherine P. Liao, et al. (2019) .).
How to cite:
Thomas Charlon (2019). MAP: Multimodal Automated Phenotyping. R package version 1.0.0, https://cran.r-project.org/web/packages/MAP. Accessed 11 Aug. 2026.
Previous versions and publish date:
0.1.3 (2019-04-01 10:20), (2026-07-09 08:08)
Other packages that cited MAP R package
View MAP citation profile
Other R packages that MAP depends, imports, suggests or enhances
Complete documentation for MAP
Functions, R codes and Examples using the MAP R package
Some associated functions: MAP . 
Some associated R codes: MAP.R .  Full MAP package functions and examples
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