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MACER
View on CRAN: Click
here
Download and install MACER package within the R console
Install from CRAN:
install.packages("MACER")
Install from Github:
library("remotes")
install_github("cran/MACER")
Install by package version:
library("remotes")
install_version("MACER", "0.2.1")
Attach the package and use:
library("MACER")
Maintained by
Robert G Young
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-07-05
Latest Update: 2022-12-02
Description:
To assist biological researchers in assembling taxonomically and marker focused molecular sequence data sets. 'MACER' accepts a list of genera as a user input and uses NCBI-GenBank and BOLD as resources to download and assemble molecular sequence datasets. These datasets are then assembled by marker, aligned, trimmed, and cleaned. The use of this package allows the publication of specific parameters to ensure reproducibility. The 'MACER' package has four core functions and an example run through using all of these functions can be found in the associated repository .
How to cite:
Robert G Young (2021). MACER: Molecular Acquisition, Cleaning, and Evaluation in R 'MACER'. R package version 0.2.1, https://cran.r-project.org/web/packages/MACER. Accessed 03 Dec. 2024.
Previous versions and publish date:
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View MACER citation profile
Other R packages that MACER depends,
imports, suggests or enhances
Complete documentation for MACER
Functions, R codes and Examples using
the MACER R package
Some associated functions: align_to_ref . auto_seq_download . barcode_clean . create_fastas .
Some associated R codes: BOLD_download.R . MSA_data_matrix.R . NCBI_download.R . align_to_ref.R . auto_seq_download.R . barcode_clean.R . create_fastas.R . data_clean.R . fasta_to_table.R . forward_reverse_trim.R . readpath.R . remove_internal_gaps.R . Full MACER package functions and examples
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