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MAAPER  

Analysis of Alternative Polyadenylation Using 3' End-Linked Reads
View on CRAN: Click here


Download and install MAAPER package within the R console
Install from CRAN:
install.packages("MAAPER")

Install from Github:
library("remotes")
install_github("cran/MAAPER")

Install by package version:
library("remotes")
install_version("MAAPER", "1.1.1")



Attach the package and use:
library("MAAPER")
Maintained by
Wei Vivian Li
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-06-21
Latest Update: 2021-08-14
Description:
A computational method developed for model-based analysis of alternative polyadenylation (APA) using 3' end-linked reads. It accurately assigns 3' RNA-seq reads to polyA sites through statistical modeling, and generates multiple statistics for APA analysis. Please also see Li WV, Zheng D, Wang R, Tian B (2021) .
How to cite:
Wei Vivian Li (2021). MAAPER: Analysis of Alternative Polyadenylation Using 3' End-Linked Reads. R package version 1.1.1, https://cran.r-project.org/web/packages/MAAPER. Accessed 26 Aug. 2026.
Previous versions and publish date:
1.1.0 (2021-06-21 11:40), 1.1.1 (2021-08-14 16:20), (2026-07-09 08:08)
Other packages that cited MAAPER R package
View MAAPER citation profile
Other R packages that MAAPER depends, imports, suggests or enhances
Complete documentation for MAAPER
Functions, R codes and Examples using the MAAPER R package
Some associated functions: maaper . 
Some associated R codes: get_estimation.R . get_reads_from_bam.R . get_training_v5.R . gtf_to_gene_models.R . maaper.R . main.R . main_predict.R . utils.R .  Full MAAPER package functions and examples
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