Other packages > Find by keyword >

M3JF  

Multi-Modal Matrix Joint Factorization for Integrative Multi-Omics Data Analysis
View on CRAN: Click here


Download and install M3JF package within the R console
Install from CRAN:
install.packages("M3JF")

Install from Github:
library("remotes")
install_github("cran/M3JF")

Install by package version:
library("remotes")
install_version("M3JF", "0.1.0")



Attach the package and use:
library("M3JF")
Maintained by
Xiaoyao Yin
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2023-08-14
Latest Update: 2023-08-14
Description:
Multi modality data matrices are factorized conjointly into the multiplication of a shared sub-matrix and multiple modality specific sub-matrices, group sparse constraint is applied to the shared sub-matrix to capture the homogeneous and heterogeneous information, respectively. Then the samples are classified by clustering the shared sub-matrix with kmeanspp(), a new version of kmeans() developed here to obtain concordant results. The package also provides the cluster number estimation by rotation cost. Moreover, cluster specific features could be retrieved using hypergeometric tests.
How to cite:
Xiaoyao Yin (2023). M3JF: Multi-Modal Matrix Joint Factorization for Integrative Multi-Omics Data Analysis. R package version 0.1.0, https://cran.r-project.org/web/packages/M3JF. Accessed 04 Jul. 2026.
Previous versions and publish date:
No previous versions
Other packages that cited M3JF R package
View M3JF citation profile
Other R packages that M3JF depends, imports, suggests or enhances
Complete documentation for M3JF
Functions, R codes and Examples using the M3JF R package
Full M3JF package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

multiwayvcov  
Multi-Way Standard Error Clustering
Exports two functions implementing multi-way clustering using the method suggested by Cameron, Gelb ...
Download / Learn more Package Citations See dependency  
PELVIS  
Probabilistic Sex Estimate using Logistic Regression, Based on VISual Traits of the Human Os Coxae
An R-Shiny application implementing a method of sexing the human os coxae based on logistic regressi ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
SurvCorr  
Correlation of Bivariate Survival Times
Estimates correlation coefficients with associated confidence limits for bivariate, partially censo ...
Download / Learn more Package Citations See dependency  
missCompare  
Intuitive Missing Data Imputation Framework
Offers a convenient pipeline to test and compare various missing data imputation algorithms on simu ...
Download / Learn more Package Citations See dependency  
musica  
Multiscale Climate Model Assessment
Provides functions allowing for (1) easy aggregation of multivariate time series into custom time sc ...
Download / Learn more Package Citations See dependency  

27,653

R Packages

236,180

Dependencies

73,674

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA