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LoopRig
View on CRAN: Click
here
Download and install LoopRig package within the R console
Install from CRAN:
install.packages("LoopRig")
Install from Github:
library("remotes")
install_github("cran/LoopRig")
Install by package version:
library("remotes")
install_version("LoopRig", "0.1.1")
Attach the package and use:
library("LoopRig")
Maintained by
Hassaan Maan
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2019-12-20
Latest Update: 2019-12-20
Description:
Common coordinate-based workflows involving processed chromatin loop and genomic element data are considered and packaged into appropriate customizable functions. Includes methods for linking element sets via chromatin loops and creating consensus loop datasets.
How to cite:
Hassaan Maan (2019). LoopRig: Integration and Analysis of Chromatin Loop Data. R package version 0.1.1, https://cran.r-project.org/web/packages/LoopRig. Accessed 22 Dec. 2024.
Previous versions and publish date:
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Other R packages that LoopRig depends,
imports, suggests or enhances
Complete documentation for LoopRig
Functions, R codes and Examples using
the LoopRig R package
Some associated functions: ConsensusLoops . DropLoops . ElementsToRanges . ExportBED . LinkedElements . LoopsToRanges . ScaffoldElements . StackedElements .
Some associated R codes: ConsensusLoops.R . DropLoops.R . ElementsToRanges.R . ExportBED.R . LinkedElements.R . LoopsToRanges.R . ScaffoldElements.R . StackedElements.R . Full LoopRig package functions and examples
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