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LipidMS  

Lipid Annotation for LC-MS/MS DDA or DIA Data
View on CRAN: Click here


Download and install LipidMS package within the R console
Install from CRAN:
install.packages("LipidMS")

Install from Github:
library("remotes")
install_github("cran/LipidMS")

Install by package version:
library("remotes")
install_version("LipidMS", "3.0.4")



Attach the package and use:
library("LipidMS")
Maintained by
M Isabel Alcoriza-Balaguer
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-07-12
Latest Update: 2022-02-22
Description:
Lipid annotation in untargeted LC-MS lipidomics based on fragmentation rules. Alcoriza-Balaguer MI, Garcia-Canaveras JC, Lopez A, Conde I, Juan O, Carretero J, Lahoz A (2019) .
How to cite:
M Isabel Alcoriza-Balaguer (2018). LipidMS: Lipid Annotation for LC-MS/MS DDA or DIA Data. R package version 3.0.4, https://cran.r-project.org/web/packages/LipidMS
Previous versions and publish date:
0.1.0 (2018-07-12 12:40), 1.0.0 (2018-10-15 20:30), 1.1.0 (2019-10-21 15:30), 1.2.0 (2020-11-20 14:50), 2.0.0 (2021-01-19 16:30), 2.1.0 (2021-02-11 10:20), 2.1.1 (2021-02-22 15:30), 2.1.2 (2021-03-02 10:20), 2.1.3 (2021-03-18 12:30), 3.0.0 (2021-05-25 15:40), 3.0.1 (2021-07-07 08:40), 3.0.2 (2022-01-17 13:12), 3.0.3 (2022-02-22 18:30)
Other packages that cited LipidMS R package
View LipidMS citation profile
Other R packages that LipidMS depends, imports, suggests or enhances
Functions, R codes and Examples using the LipidMS R package
Some associated functions: CEdb . LipidMSapp . MassAcylCer . MassCE . MassCL . MassCarnitines . MassCer . MassCerP . MassDG . MassFA . MassFAHFA . MassGlcCer . MassHFA . MassLysoPA . MassLysoPAo . MassLysoPC . MassLysoPCo . MassLysoPCp . MassLysoPE . MassLysoPEo . MassLysoPEp . MassLysoPG . MassLysoPI . MassLysoPS . MassMG . MassPA . MassPC . MassPCo . MassPCp . MassPE . MassPEo . MassPEp . MassPG . MassPI . MassPIP . MassPIP2 . MassPIP3 . MassPS . MassSM . MassSph . MassSphP . MassTG . acylcerdb . adductsTable . alignmsbatch . annotateIsotopes . annotatemsbatch . assignDB . baconjdb . badb . batchdataProcessing . carnitinesdb . cbs . cerPdb . cerdb . chainFrags . chains . checkClass . checkIntRules . checkIntensityRules . cldb . clust . clustdist . clustering . coelutingFrags . coelutionScore . combineChains . confLevels . createLipidDB . crossAdducts . crossTables . dataProcessing . dbFourChains . dbOneChain . dbSphingolipids . dbThreeChains . dbTwoChains . ddaFrags . dgdb . diffcb . fadb . fahfadb . fillpeaksmsbatch . filtermsms . filtrateAdducts . findCandidates . findMS2precursor . findPrecursor . frags . getFormula . getInclusionList . getallpeaks . getfeaturestable . groupmsbatch . hfadb . idAcylCerneg . idAcylCerpos . idBAneg . idCEpos . idCLneg . idCarpos . idCerPneg . idCerPpos . idCerneg . idCerpos . idDGpos . idFAHFAneg . idFAneg . idLPCneg . idLPCpos . idLPEneg . idLPEpos . idLPGneg . idLPIneg . idLPSneg . idMGpos . idNEG . idPCneg . idPConeg . idPCopos . idPCpneg . idPCpos . idPCppos . idPEneg . idPEoneg . idPEopos . idPEpneg . idPEpos . idPEppos . idPGneg . idPGpos . idPIneg . idPIpos . idPOS . idPSneg . idSMneg . idSMpos . idSphPneg . idSphPpos . idSphneg . idSphpos . idTGpos . indexrtpart . joinAnnotationResults . joinfrags . lysopadb . lysopaodb . lysopcdb . lysopcodb . lysopcpdb . lysopedb . lysopeodb . lysopepdb . lysopgdb . lysopidb . lysopsdb . mgdb . mzMatch . nlsphdb . organizeResults . padb . partitioning . pcdb . pcodb . pcpdb . peakdetection . pedb . peodb . pepdb . pgdb . pidb . plotLipids . ploteicmsbatch . plotticmsbatch . psdb . readMSfile . rtcorrection . rtdevplot . searchIsotopes . searchIsotopesmsbatch . select . setmsbatch . smdb . sphPdb . sphdb . sumChains . tgdb . 
Some associated R codes: LipidMS.R . LipidMSapp.R . additionalFunctions.R . dataProcessing.R . idFunctionsNeg.R . idFunctionsPos.R . internal.R . internalProcessing.R . internaldbs.R . msbatchAnnotationFunctions.R . subfunctionsIdentification.R .  Full LipidMS package functions and examples
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