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LUCIDus  

LUCID with Multiple Omics Data
View on CRAN: Click here


Download and install LUCIDus package within the R console
Install from CRAN:
install.packages("LUCIDus")

Install from Github:
library("remotes")
install_github("cran/LUCIDus")

Install by package version:
library("remotes")
install_version("LUCIDus", "3.0.1")



Attach the package and use:
library("LUCIDus")
Maintained by
Qiran Jia
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2018-12-21
Latest Update: 2023-10-31
Description:
An implementation of estimating the Latent Unknown Clusters By Integrating Multi-omics Data (LUCID) model (Peng (2019) ). LUCID conducts integrated clustering using exposures, omics data (and outcome as an option). This is a major update from the last version while conserving all the previous features. This package implements three different integration strategies for multiple omics data analysis within the LUCID framework: LUCID early integration (the original LUCID model), LUCID in parallel (intermediate), and LUCID in serial (late). Automated model selection for each LUCID model is available to obtain the optimal number of latent clusters, and an integrated imputation approach is implemented to handle sporadic and list-wise missing multiple omics data.
How to cite:
Qiran Jia (2018). LUCIDus: LUCID with Multiple Omics Data. R package version 3.0.1, https://cran.r-project.org/web/packages/LUCIDus
Previous versions and publish date:
0.9.0 (2018-12-21 16:20), 1.0.0 (2019-12-02 08:40), 2.0.0 (2020-05-18 10:20), 2.1.0 (2020-07-22 10:00), 2.1.4 (2022-03-03 00:50), 2.1.5-1 (2022-04-06 12:32), 2.1.5-2 (2022-06-01 07:40), 2.1.5 (2022-03-28 23:40), 2.2.1 (2022-11-08 11:10), 2.2 (2022-08-08 00:40)
Other packages that cited LUCIDus R package
View LUCIDus citation profile
Other R packages that LUCIDus depends, imports, suggests or enhances
Functions, R codes and Examples using the LUCIDus R package
Some associated functions: Istep_Z . boot.lucid . boot_lucid . check_na . est.lucid . est_lucid . fill_data . gen_ci . helix_data . lucid . plot_lucid . predict_lucid . print.lucid . print.sumlucid . sim_data . summary_lucid . tune_lucid . 
Some associated R codes: binary.R . boot_lucid.R . data.R . deprecated_fun.R . est_lucid.R . est_lucid_helper.R . lucid.R . missing.R . normal.R . plot_lucid.R . pred_lucid.R . summary_lucid.R . tune_lucid.R .  Full LUCIDus package functions and examples
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