Other packages > Find by keyword >

LEAP  

Constructing Gene Co-Expression Networks for Single-Cell RNA-Sequencing Data Using Pseudotime Ordering
View on CRAN: Click here


Download and install LEAP package within the R console
Install from CRAN:
install.packages("LEAP")

Install from Github:
library("remotes")
install_github("cran/LEAP")

Install by package version:
library("remotes")
install_version("LEAP", "0.2")



Attach the package and use:
library("LEAP")
Maintained by
Alicia T. Specht
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-05-15
Latest Update:
Description:
Advances in sequencing technology now allow researchers to capture the expression profiles of individual cells. Several algorithms have been developed to attempt to account for these effects by determining a cells so-called pseudotime or relative biological state of transition. By applying these algorithms to single-cell sequencing data we can sort cells into their pseudotemporal ordering based on gene expression. LEAP Lag-based Expression Association for Pseudotime-series then applies a time-series inspired lag-based correlation analysis to reveal linearly dependent genetic associations.
How to cite:
Alicia T. Specht (2016). LEAP: Constructing Gene Co-Expression Networks for Single-Cell RNA-Sequencing Data Using Pseudotime Ordering. R package version 0.2, https://cran.r-project.org/web/packages/LEAP. Accessed 26 Jun. 2026.
Previous versions and publish date:
0.1 (2016-05-15 22:01), 0.2 (2016-09-13 21:19)
Other packages that cited LEAP R package
View LEAP citation profile
Other R packages that LEAP depends, imports, suggests or enhances
Functions, R codes and Examples using the LEAP R package
Some associated functions: LEAP-package . MAC_counter . MAC_example . MAC_lags . MAC_perm . MAC_symmetric . example_data . lag_example . perm_example . 
Some associated R codes: MAC_counter.R . MAC_lags.R . MAC_perm.R .  Full LEAP package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

PoisBinOrdNor  
Data Generation with Poisson, Binary, Ordinal and Normal Components
Generation of multiple count, binary, ordinal and normal variables simultaneously given the marginal ...
Download / Learn more Package Citations See dependency  
tactile  
New and Extended Plots, Methods, and Panel Functions for 'lattice'
Extensions to 'lattice', providing new high-level functions, methods for existing functions, panel f ...
Download / Learn more Package Citations See dependency  
infotheo  
Information-Theoretic Measures
Implements various measures of information theory based on several entropy estimators. ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
colormap  
Color Palettes using Colormaps Node Module
Allows to generate colors from palettes defined in the colormap module of 'Node.js'. (see ...
Download / Learn more Package Citations See dependency  
ggblanket  
Simplify 'ggplot2' Visualisation
Simplify 'ggplot2' visualisation with 'ggblanket' wrapper functions. ...
Download / Learn more Package Citations See dependency  

27,535

R Packages

236,180

Dependencies

73,223

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA