Other packages > Find by keyword >

LEAP  

Constructing Gene Co-Expression Networks for Single-Cell RNA-Sequencing Data Using Pseudotime Ordering
View on CRAN: Click here


Download and install LEAP package within the R console
Install from CRAN:
install.packages("LEAP")

Install from Github:
library("remotes")
install_github("cran/LEAP")

Install by package version:
library("remotes")
install_version("LEAP", "0.2")



Attach the package and use:
library("LEAP")
Maintained by
Alicia T. Specht
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2016-05-15
Latest Update:
Description:
Advances in sequencing technology now allow researchers to capture the expression profiles of individual cells. Several algorithms have been developed to attempt to account for these effects by determining a cells so-called pseudotime or relative biological state of transition. By applying these algorithms to single-cell sequencing data we can sort cells into their pseudotemporal ordering based on gene expression. LEAP Lag-based Expression Association for Pseudotime-series then applies a time-series inspired lag-based correlation analysis to reveal linearly dependent genetic associations.
How to cite:
Alicia T. Specht (2016). LEAP: Constructing Gene Co-Expression Networks for Single-Cell RNA-Sequencing Data Using Pseudotime Ordering. R package version 0.2, https://cran.r-project.org/web/packages/LEAP. Accessed 06 Aug. 2026.
Previous versions and publish date:
0.1 (2016-05-15 22:01), 0.2 (2016-09-13 21:19), (2026-07-09 08:08)
Other packages that cited LEAP R package
View LEAP citation profile
Other R packages that LEAP depends, imports, suggests or enhances
Functions, R codes and Examples using the LEAP R package
Some associated functions: LEAP-package . MAC_counter . MAC_example . MAC_lags . MAC_perm . MAC_symmetric . example_data . lag_example . perm_example . 
Some associated R codes: MAC_counter.R . MAC_lags.R . MAC_perm.R .  Full LEAP package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

TMDb  
Access to TMDb API
Provides an R-interface to the TMDb API (see TMDb API on < ...
Download / Learn more Package Citations See dependency  
SAMBA  
Selection and Misclassification Bias Adjustment for Logistic Regression Models
Health research using data from electronic health records (EHR) has gained popularity, but miscla ...
Download / Learn more Package Citations See dependency  
RRedshiftSQL  
R Interface to the 'Redshift' Database
Superclasses 'PostgreSQL' connection to help enable full 'dplyr' functionality on 'Redshift'. ...
Download / Learn more Package Citations See dependency  
r2resize  
In-Text Resize for Images, Tables and Fancy Resize Containers in 'shiny', 'rmarkdown' and 'quarto' Documents
Automatic resizing toolbar for containers, images and tables. Various resizable or expandable contai ...
Download / Learn more Package Citations See dependency  
lsmeans  
Least-Squares Means
Obtain least-squares means for linear, generalized linear, and mixed models. Compute contrasts or l ...
Download / Learn more Package Citations See dependency  

28,083

R Packages

239,283

Dependencies

74,457

Author Associations

28,084

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA