Other packages > Find by keyword >

LDheatmap  

Graphical Display of Pairwise Linkage Disequilibria Between SNPs
View on CRAN: Click here


Download and install LDheatmap package within the R console
Install from CRAN:
install.packages("LDheatmap")

Install from Github:
library("remotes")
install_github("cran/LDheatmap")

Install by package version:
library("remotes")
install_version("LDheatmap", "1.0-6")



Attach the package and use:
library("LDheatmap")
Maintained by
Brad McNeney
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2005-03-03
Latest Update:
Description:
Produces a graphical display as a heat map of measuresof pairwise linkage disequilibria between single nucleotide polymorphisms SNPs. Users mayoptionally include the physical locations or genetic mapdistances of each SNP on the plot. The methods are described inShin et al. 2006 doi10.18637jss.v016.c03. Users should note that theimported package snpStats and the suggested packagesrtracklayer GenomicRanges GenomInfoDb and IRanges are allBioConductor packages httpsbioconductor.org.
How to cite:
Brad McNeney (2005). LDheatmap: Graphical Display of Pairwise Linkage Disequilibria Between SNPs. R package version 1.0-6, https://cran.r-project.org/web/packages/LDheatmap. Accessed 04 Jul. 2026.
Previous versions and publish date:
0.1-1 (2005-03-04 08:23), 0.1-2 (2005-04-14 09:39), 0.1-3 (2005-05-06 09:19), 0.1-4 (2005-06-19 11:43), 0.1-5 (2005-11-14 10:51), 0.1 (2005-03-03 08:49), 0.2-1 (2006-05-06 14:34), 0.2-2 (2006-10-13 12:54), 0.2-3 (2006-10-20 20:08), 0.2-4 (2007-01-11 20:41), 0.2-5 (2007-04-11 19:15), 0.2-6 (2007-09-21 17:17), 0.2-7 (2009-01-14 19:11), 0.2-8 (2010-01-11 20:57), 0.2-9 (2010-08-17 07:05), 0.2 (2006-03-07 08:32), 0.9-1 (2012-11-28 17:45), 0.9 (2011-12-17 16:18), 0.99-1 (2013-09-21 08:12), 0.99-2 (2016-08-24 18:02), 0.99-4 (2018-03-12 20:13), 0.99-5 (2018-08-16 21:00), 0.99-7 (2019-07-15 00:15), 0.99-8 (2020-06-20 00:40), 0.99 (2012-12-05 19:26), 1.0-4 (2020-10-08 12:00), 1.0-6 (2022-04-24 02:20)
Other packages that cited LDheatmap R package
View LDheatmap citation profile
Other R packages that LDheatmap depends, imports, suggests or enhances
Functions, R codes and Examples using the LDheatmap R package
Full LDheatmap package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

multiwayvcov  
Multi-Way Standard Error Clustering
Exports two functions implementing multi-way clustering using the method suggested by Cameron, Gelb ...
Download / Learn more Package Citations See dependency  
musica  
Multiscale Climate Model Assessment
Provides functions allowing for (1) easy aggregation of multivariate time series into custom time sc ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
PELVIS  
Probabilistic Sex Estimate using Logistic Regression, Based on VISual Traits of the Human Os Coxae
An R-Shiny application implementing a method of sexing the human os coxae based on logistic regressi ...
Download / Learn more Package Citations See dependency  
SurvCorr  
Correlation of Bivariate Survival Times
Estimates correlation coefficients with associated confidence limits for bivariate, partially censo ...
Download / Learn more Package Citations See dependency  
missCompare  
Intuitive Missing Data Imputation Framework
Offers a convenient pipeline to test and compare various missing data imputation algorithms on simu ...
Download / Learn more Package Citations See dependency  

27,653

R Packages

236,180

Dependencies

73,674

Author Associations

27,536

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA