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LDheatmap  

Graphical Display of Pairwise Linkage Disequilibria Between SNPs
View on CRAN: Click here


Download and install LDheatmap package within the R console
Install from CRAN:
install.packages("LDheatmap")

Install from Github:
library("remotes")
install_github("cran/LDheatmap")

Install by package version:
library("remotes")
install_version("LDheatmap", "1.0-6")



Attach the package and use:
library("LDheatmap")
Maintained by
Brad McNeney
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2005-03-04
Latest Update: 2023-01-22
Description:
Produces a graphical display as a heat map of measuresof pairwise linkage disequilibria between single nucleotide polymorphisms SNPs. Users mayoptionally include the physical locations or genetic mapdistances of each SNP on the plot. The methods are described inShin et al. 2006 doi10.18637jss.v016.c03. Users should note that theimported package snpStats and the suggested packagesrtracklayer GenomicRanges GenomInfoDb and IRanges are allBioConductor packages httpsbioconductor.org.
How to cite:
Brad McNeney (2005). LDheatmap: Graphical Display of Pairwise Linkage Disequilibria Between SNPs. R package version 1.0-6, https://cran.r-project.org/web/packages/LDheatmap. Accessed 07 Nov. 2024.
Previous versions and publish date:
0.1-1 (2005-03-04 08:23), 0.1-2 (2005-04-14 09:39), 0.1-3 (2005-05-06 09:19), 0.1-4 (2005-06-19 11:43), 0.1-5 (2005-11-14 10:51), 0.1 (2005-03-03 08:49), 0.2-1 (2006-05-06 14:34), 0.2-2 (2006-10-13 12:54), 0.2-3 (2006-10-20 20:08), 0.2-4 (2007-01-11 20:41), 0.2-5 (2007-04-11 19:15), 0.2-6 (2007-09-21 17:17), 0.2-7 (2009-01-14 19:11), 0.2-8 (2010-01-11 20:57), 0.2-9 (2010-08-17 07:05), 0.2 (2006-03-07 08:32), 0.9-1 (2012-11-28 17:45), 0.9 (2011-12-17 16:18), 0.99-1 (2013-09-21 08:12), 0.99-2 (2016-08-24 18:02), 0.99-4 (2018-03-12 20:13), 0.99-5 (2018-08-16 21:00), 0.99-7 (2019-07-15 00:15), 0.99-8 (2020-06-20 00:40), 0.99 (2012-12-05 19:26), 1.0-4 (2020-10-08 12:00), 1.0-6 (2022-04-24 02:20)
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Functions, R codes and Examples using the LDheatmap R package
Full LDheatmap package functions and examples
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