Other packages > Find by keyword >

LDheatmap  

Graphical Display of Pairwise Linkage Disequilibria Between SNPs
View on CRAN: Click here


Download and install LDheatmap package within the R console
Install from CRAN:
install.packages("LDheatmap")

Install from Github:
library("remotes")
install_github("cran/LDheatmap")

Install by package version:
library("remotes")
install_version("LDheatmap", "1.0-6")



Attach the package and use:
library("LDheatmap")
Maintained by
Brad McNeney
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2005-03-04
Latest Update: 2023-01-22
Description:
Produces a graphical display as a heat map of measuresof pairwise linkage disequilibria between single nucleotide polymorphisms SNPs. Users mayoptionally include the physical locations or genetic mapdistances of each SNP on the plot. The methods are described inShin et al. 2006 doi10.18637jss.v016.c03. Users should note that theimported package snpStats and the suggested packagesrtracklayer GenomicRanges GenomInfoDb and IRanges are allBioConductor packages httpsbioconductor.org.
How to cite:
Brad McNeney (2005). LDheatmap: Graphical Display of Pairwise Linkage Disequilibria Between SNPs. R package version 1.0-6, https://cran.r-project.org/web/packages/LDheatmap
Previous versions and publish date:
0.1-1 (2005-03-04 08:23), 0.1-2 (2005-04-14 09:39), 0.1-3 (2005-05-06 09:19), 0.1-4 (2005-06-19 11:43), 0.1-5 (2005-11-14 10:51), 0.1 (2005-03-03 08:49), 0.2-1 (2006-05-06 14:34), 0.2-2 (2006-10-13 12:54), 0.2-3 (2006-10-20 20:08), 0.2-4 (2007-01-11 20:41), 0.2-5 (2007-04-11 19:15), 0.2-6 (2007-09-21 17:17), 0.2-7 (2009-01-14 19:11), 0.2-8 (2010-01-11 20:57), 0.2-9 (2010-08-17 07:05), 0.2 (2006-03-07 08:32), 0.9-1 (2012-11-28 17:45), 0.9 (2011-12-17 16:18), 0.99-1 (2013-09-21 08:12), 0.99-2 (2016-08-24 18:02), 0.99-4 (2018-03-12 20:13), 0.99-5 (2018-08-16 21:00), 0.99-7 (2019-07-15 00:15), 0.99-8 (2020-06-20 00:40), 0.99 (2012-12-05 19:26), 1.0-4 (2020-10-08 12:00), 1.0-6 (2022-04-24 02:20)
Other packages that cited LDheatmap R package
View LDheatmap citation profile
Other R packages that LDheatmap depends, imports, suggests or enhances
Functions, R codes and Examples using the LDheatmap R package
Full LDheatmap package functions and examples
Downloads during the last 30 days
Get rewarded with contribution points by helping add
Reviews / comments / questions /suggestions ↴↴↴

Today's Hot Picks in Authors and Packages

highMLR  
Feature Selection for High Dimensional Survival Data
Perform high dimensional Feature Selection in the presence of survival outcome. Based on Feature Se ...
Download / Learn more Package Citations See dependency  
tpr  
Temporal Process Regression
Regression models for temporal process responses with time-varying coefficient. ...
Download / Learn more Package Citations See dependency  
risksetROC  
Riskset ROC Curve Estimation from Censored Survival Data
Compute time-dependent Incident/dynamic accuracy measures (ROC curve, AUC, integrated AUC )from cen ...
Download / Learn more Package Citations See dependency  
ContRespPP  
Predictive Probability for a Continuous Response with an ANOVA Structure
A Bayesian approach to using predictive probability in an ANOVA construct with a continuous normal ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
proftools  
Profile Output Processing Tools for R
Tools for examining Rprof profile output. ...
Download / Learn more Package Citations See dependency  

22,299

R Packages

189,944

Dependencies

55,238

Author Associations

22,300

Publication Badges

© Copyright 2022 - present. All right reserved, rpkg.net. Contact Us / Suggestions / Concerns