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KOGMWU  

Functional Summary and Meta-Analysis of Gene Expression Data
View on CRAN: Click here


Download and install KOGMWU package within the R console
Install from CRAN:
install.packages("KOGMWU")

Install from Github:
library("remotes")
install_github("cran/KOGMWU")

Install by package version:
library("remotes")
install_version("KOGMWU", "1.2")



Attach the package and use:
library("KOGMWU")
Maintained by
Mikhail V. Matz
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2015-03-05
Latest Update: 2019-02-19
Description:
Rank-based tests for enrichment of KOG (euKaryotic Orthologous Groups) classes with up- or down-regulated genes based on a continuous measure. The meta-analysis is based on correlation of KOG delta-ranks across datasets (delta-rank is the difference between mean rank of genes belonging to a KOG class and mean rank of all other genes). With binary measure (1 or 0 to indicate significant and non-significant genes), one-tailed Fisher's exact test for over-representation of each KOG class among significant genes will be performed.
How to cite:
Mikhail V. Matz (2015). KOGMWU: Functional Summary and Meta-Analysis of Gene Expression Data. R package version 1.2, https://cran.r-project.org/web/packages/KOGMWU. Accessed 22 Dec. 2024.
Previous versions and publish date:
1.0 (2015-03-05 08:50), 1.1 (2016-11-17 08:27)
Other packages that cited KOGMWU R package
View KOGMWU citation profile
Other R packages that KOGMWU depends, imports, suggests or enhances
Complete documentation for KOGMWU
Functions, R codes and Examples using the KOGMWU R package
Some associated functions: KOGMWU-package . adults.3dHeat.logFoldChange . corrPlot . gene2kog . kog.ft . kog.mwu . kog.mwut . larvae.longTerm . larvae.shortTerm . makeDeltaRanksTable . panel.cor . panel.cor.pval . 
Some associated R codes: corrPlot.R . kog.ft.R . kog.mwu.R . kog.mwut.R . makeDeltaRanksTable.R . panel.cor.R . panel.cor.pval.R .  Full KOGMWU package functions and examples
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