Other packages > Find by keyword >

JBrowseR  

An R Interface to the JBrowse 2 Genome Browser
View on CRAN: Click here


Download and install JBrowseR package within the R console
Install from CRAN:
install.packages("JBrowseR")

Install from Github:
library("remotes")
install_github("cran/JBrowseR")

Install by package version:
library("remotes")
install_version("JBrowseR", "0.10.2")



Attach the package and use:
library("JBrowseR")
Maintained by
Colin Diesh
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-02-22
Latest Update: 2023-12-20
Description:
Provides an R interface to the JBrowse 2 genome browser. Enables embedding a JB2 genome browser in a Shiny app or R Markdown document. The browser can also be launched from an interactive R console. The browser can be loaded with a variety of common genomics data types, and can be used with a custom theme.
How to cite:
Colin Diesh (2021). JBrowseR: An R Interface to the JBrowse 2 Genome Browser. R package version 0.10.2, https://cran.r-project.org/web/packages/JBrowseR. Accessed 26 Aug. 2026.
Previous versions and publish date:
0.7.0 (2021-02-22 13:10), 0.7.1 (2021-03-27 07:30), 0.8.0 (2021-05-21 21:00), 0.8.1 (2021-07-07 22:30), 0.9.0 (2021-10-17 23:40), 0.9.1 (2022-07-20 00:30), 0.10.0 (2023-06-08 06:43), (2026-07-09 08:07)
Other packages that cited JBrowseR R package
View JBrowseR citation profile
Other R packages that JBrowseR depends, imports, suggests or enhances
Complete documentation for JBrowseR
Functions, R codes and Examples using the JBrowseR R package
Some associated functions: JBrowseR-shiny . JBrowseR . assembly . default_session . json_config . pipe . serve_data . text_index . theme . track_alignments . track_data_frame . track_feature . track_variant . track_wiggle . tracks . 
Some associated R codes: JBrowseR.R . alignments.R . assembly.R . data_frame.R . feature.R . json.R . server.R . session.R . text-index.R . theme.R . tracks.R . utils-pipe.R . utils.R . variant.R . wiggle.R .  Full JBrowseR package functions and examples
Downloads during the last 30 days

Today's Hot Picks in Authors and Packages

PCADSC  
Tools for Principal Component Analysis-Based Data Structure Comparisons
A suite of non-parametric, visual tools for assessing differences in data structures for two datase ...
Download / Learn more Package Citations See dependency  
leafgl  
High-Performance 'WebGl' Rendering for Package 'leaflet'
Provides bindings to the 'Leaflet.glify' JavaScript library which extends the 'leaflet' JavaScript l ...
Download / Learn more Package Citations See dependency  
SelvarMix  
Regularization for Variable Selection in Model-Based Clustering and Discriminant Analysis
Performs a regularization approach to variable selection in themodel-based clustering and classifica ...
Download / Learn more Package Citations See dependency  
RCytoGPS  
Using Cytogenetics Data in R
Defines classes and methods to process text-based cytogenetics using the CytoGPS web site, then imp ...
Download / Learn more Package Citations See dependency  
clinUtils  
General Utility Functions for Analysis of Clinical Data
Utility functions to facilitate the import, the reporting and analysis of clinical data. Example ...
Download / Learn more Package Citations See dependency  
nextGenShinyApps  
Craft Exceptional 'R Shiny' Applications and Dashboards with Novel Responsive Tools
Nove responsive tools for designing and developing 'Shiny' dashboards and applications. The scripts ...
Download / Learn more Package Citations See dependency  

28,332

R Packages

239,283

Dependencies

75,113

Author Associations

28,333

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA