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JBrowseR  

An R Interface to the JBrowse 2 Genome Browser
View on CRAN: Click here


Download and install JBrowseR package within the R console
Install from CRAN:
install.packages("JBrowseR")

Install from Github:
library("remotes")
install_github("cran/JBrowseR")

Install by package version:
library("remotes")
install_version("JBrowseR", "0.10.2")



Attach the package and use:
library("JBrowseR")
Maintained by
Colin Diesh
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2021-02-22
Latest Update: 2023-12-20
Description:
Provides an R interface to the JBrowse 2 genome browser. Enables embedding a JB2 genome browser in a Shiny app or R Markdown document. The browser can also be launched from an interactive R console. The browser can be loaded with a variety of common genomics data types, and can be used with a custom theme.
How to cite:
Colin Diesh (2021). JBrowseR: An R Interface to the JBrowse 2 Genome Browser. R package version 0.10.2, https://cran.r-project.org/web/packages/JBrowseR
Previous versions and publish date:
0.7.0 (2021-02-22 13:10), 0.7.1 (2021-03-27 07:30), 0.8.0 (2021-05-21 21:00), 0.8.1 (2021-07-07 22:30), 0.9.0 (2021-10-17 23:40), 0.9.1 (2022-07-20 00:30), 0.10.0 (2023-06-08 06:43)
Other packages that cited JBrowseR R package
View JBrowseR citation profile
Other R packages that JBrowseR depends, imports, suggests or enhances
Functions, R codes and Examples using the JBrowseR R package
Some associated functions: JBrowseR-shiny . JBrowseR . assembly . default_session . json_config . pipe . serve_data . text_index . theme . track_alignments . track_data_frame . track_feature . track_variant . track_wiggle . tracks . 
Some associated R codes: JBrowseR.R . alignments.R . assembly.R . data_frame.R . feature.R . json.R . server.R . session.R . text-index.R . theme.R . tracks.R . utils-pipe.R . utils.R . variant.R . wiggle.R .  Full JBrowseR package functions and examples
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