Other packages > Find by keyword >

JATSdecoder  

A Metadata and Text Extraction and Manipulation Tool Set
View on CRAN: Click here


Download and install JATSdecoder package within the R console
Install from CRAN:
install.packages("JATSdecoder")

Install from Github:
library("remotes")
install_github("cran/JATSdecoder")

Install by package version:
library("remotes")
install_version("JATSdecoder", "1.2.0")



Attach the package and use:
library("JATSdecoder")
Maintained by
Ingmar Böschen
[Scholar Profile | Author Map]
First Published: 2022-09-30
Latest Update: 2023-10-12
Description:
Provides a function collection to extract metadata, sectioned text and study characteristics from scientific articles in 'NISO-JATS' format. Articles in PDF format can be converted to 'NISO-JATS' with the 'Content ExtRactor and MINEr' ('CERMINE', ). For convenience, two functions bundle the extraction heuristics: JATSdecoder() converts 'NISO-JATS'-tagged XML files to a structured list with elements title, author, journal, history, 'DOI', abstract, sectioned text and reference list. study.character() extracts multiple study characteristics like number of included studies, statistical methods used, alpha error, power, statistical results, correction method for multiple testing, software used. An estimation of the involved sample size is performed based on reports within the abstract and the reported degrees of freedom within statistical results. In addition, the package contains some useful functions to process text (text2sentences(), text2num(), ngram(), strsplit2(), grep2()). See B
How to cite:
Ingmar Böschen (2022). JATSdecoder: A Metadata and Text Extraction and Manipulation Tool Set. R package version 1.2.0, https://cran.r-project.org/web/packages/JATSdecoder. Accessed 05 May. 2025.
Previous versions and publish date:
1.1.1 (2022-10-21 14:58), 1.1.2 (2023-02-27 20:42), 1.1 (2022-09-30 19:30)
Other packages that cited JATSdecoder R package
View JATSdecoder citation profile
Other R packages that JATSdecoder depends, imports, suggests or enhances
Complete documentation for JATSdecoder
Functions, R codes and Examples using the JATSdecoder R package
Some associated functions: JATSdecoder . allStats . est.ss . get.R.package . get.abstract . get.aff . get.alpha.error . get.assumptions . get.author . get.category . get.contrib . get.country . get.doi . get.editor . get.history . get.journal . get.keywords . get.method . get.multi.comparison . get.n.studies . get.outlier.def . get.power . get.references . get.sentence.with.pattern . get.sig.adjectives . get.software . get.stats . get.subject . get.tables . get.test.direction . get.text . get.title . get.type . get.vol . grep2 . has.interaction . letter.convert . ngram . preCheck . standardStats . strsplit2 . study.character . text2num . text2sentences . vectorize.text . which.term . 
Some associated R codes: JATS_get.abstract.R . JATS_get.aff.R . JATS_get.author.R . JATS_get.category.R . JATS_get.contrib.R . JATS_get.country.R . JATS_get.doi.R . JATS_get.editor.R . JATS_get.history.R . JATS_get.journal.R . JATS_get.keywords.R . JATS_get.references.R . JATS_get.subject.R . JATS_get.tables.R . JATS_get.text.R . JATS_get.title.R . JATS_get.type.R . JATS_get.vol.R . JATSdecoder.R . character_allStats.R . character_est.ss.R . character_get.R.package.R . character_get.alpha.error.R . character_get.assumption.R . character_get.method.R . character_get.multi.comparison.R . character_get.n.studies.R . character_get.outlier.def.R . character_get.power.R . character_get.sig.adjectives.R . character_get.software.R . character_get.stats.R . character_get.test.direction.R . character_has.interaction.R . character_standardStats.R . helper_get.sentence.with.pattern.R . helper_grep2.R . helper_letter.convert.R . helper_ngram.R . helper_preCheck.R . helper_strsplit2.R . helper_text2num.R . helper_text2sentences.R . helper_vectorize.text.R . helper_which.term.R . study.character.R .  Full JATSdecoder package functions and examples
Downloads during the last 30 days
04/0504/0604/0704/0804/0904/1004/1104/1204/1304/1404/1504/1604/1704/1804/1904/2004/2104/2204/2304/2404/2504/2604/2704/2804/2904/3005/0105/03Downloads for JATSdecoder246810121416182022242628TrendBars

Today's Hot Picks in Authors and Packages

pdqr  
Work with Custom Distribution Functions
Create, transform, and summarize custom random variables with distribution functions (analogues of ...
Download / Learn more Package Citations See dependency  
BINCOR  
Estimate the Correlation Between Two Irregular Time Series
Estimate the correlation between two irregular time series that are not necessarily sampled on ident ...
Download / Learn more Package Citations See dependency  
quickcode  
Quick and Essential 'R' Tricks for Better Scripts
The NOT functions, 'R' tricks and a compilation of some simple quick plus often used 'R' codes to im ...
Download / Learn more Package Citations See dependency  
rsvd  
Randomized Singular Value Decomposition
Low-rank matrix decompositions are fundamental tools and widely used for data analysis, dimension r ...
Download / Learn more Package Citations See dependency  
lifecourse  
Quantification of Lifecourse Fluidity
Provides in built datasets and three functions. These functions are mobility_index, nonStanTest and ...
Download / Learn more Package Citations See dependency  
cape  
Combined Analysis of Pleiotropy and Epistasis for Diversity Outbred Mice
Combined Analysis of Pleiotropy and Epistasis infers predictive networks between genetic variants a ...
Download / Learn more Package Citations See dependency  

24,187

R Packages

207,311

Dependencies

65,312

Author Associations

24,143

Publication Badges

© Copyright since 2022. All right reserved, rpkg.net.  Based in Cambridge, Massachusetts, USA