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IsoGene
View on CRAN: Click
here
Download and install IsoGene package within the R console
Install from CRAN:
install.packages("IsoGene")
Install from Github:
library("remotes")
install_github("cran/IsoGene")
Install by package version:
library("remotes")
install_version("IsoGene", "1.0-24")
Attach the package and use:
library("IsoGene")
Maintained by
Rudradev Sengupta
[Scholar Profile | Author Map]
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2009-05-26
Latest Update: 2015-07-31
Description:
Offers framework for testing for monotonic relationship between gene expression and doses in a microarray experiment. Several testing procedures including the global likelihood-ratio test (Bartholomew, 1961), Williams (1971, 1972), Marcus (1976), M (Hu et al. 2005) and the modified M (Lin et al. 2007) are used to test for the monotonic trend in gene expression with respect to doses. BH (Benjamini and Hochberg 1995) and BY (Benjamini and Yekutieli 2004) FDR controlling procedures are applied to adjust the raw p-values obtained from the permutations.
How to cite:
Rudradev Sengupta (2009). IsoGene: Order-Restricted Inference for Microarray Experiments. R package version 1.0-24, https://cran.r-project.org/web/packages/IsoGene. Accessed 21 Nov. 2024.
Previous versions and publish date:
1.0-13 (2009-05-26 19:56), 1.0-14 (2009-06-14 20:50), 1.0-15 (2009-10-04 17:43), 1.0-16 (2010-03-22 15:22), 1.0-17 (2010-08-05 12:31), 1.0-18 (2010-12-10 16:02), 1.0-19 (2011-11-15 09:56), 1.0-20 (2012-03-13 14:19), 1.0-21 (2013-03-14 11:37), 1.0-22 (2013-11-05 09:43), 1.0-23 (2014-12-18 10:32), 1.0-24 (2015-07-31 12:12)
Other packages that cited IsoGene R package
View IsoGene citation profile
Other R packages that IsoGene depends,
imports, suggests or enhances
Functions, R codes and Examples using
the IsoGene R package
Some associated functions: IsoBHPlot . IsoGene.package . IsoGene1 . IsoGenem . IsoGenemSAM . IsoPlot . IsoRawp . IsoSAMPlot . IsoTestBH . IsoTestSAM . Isoallfdr . Isofudge . IsomaxT . IsopvaluePlot . Isoqqstat . Isoqval . dopamine . exampleData .
Some associated R codes: IsoBHPlot.R . IsoGene1.R . IsoGenem.R . IsoGenemSAM.R . IsoPlot.R . IsoRawp.R . IsoSAMPlot.R . IsoTestBH.R . IsoTestSAM.R . Isoallfdr.R . Isofudge.R . IsomaxT.R . IsopvaluePlot.R . Isoqqstat.R . Isoqval.R . Full IsoGene package functions and examples
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